Gene
| Gene Model ID | pfu_aug1.0_352.1_36513 |
|---|---|
| Locus | scaffold352.1 : 26786 ... 30436 : + |
| To GenomeBrowser | scaffold352.1:26786..30436 |
| Genes list of scaffold | scaffold352.1 |
| Synonym | pfu_aug2.0_79.1_30152 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | actin |
| Description | Actin partial sequence. BLASTP top hit to EU234531(Crassostrea ariakensis). The amino acid sequence lacks the N-terminal region of 47 amino acids compared with ohter actin sequences. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_352.1_36513.t1 | 1 | 1 | Actin | 5 | 329 | 0.0 | 476.8 | 0.0 | 0.0 | 476.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_352.1_36513.t1 | gi|313212822|emb|CBY36739.1| | unnamed protein product [Oikopleura dioica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_352.1_36513.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_352.1_36513.t1 atgggacagaaggacagctatgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccccattgaaca cggtattgtcacaaactgggacgatatggagaagatctggcatcataccttctacaatgaactccgagtggcccccgagg aacaccctgttctcttgactgaggctccactcaacccaaaggcaaacagagaaaagatgacacagatcatgtttgaaacc ttcaactctcccgccatgtacgtagctatccaagccgtgctctcactgtacgcttccggtcgtactacaggtatcgtact ggactctggggatggggtatcacacacagtaccaatctacgaaggatacgcccttccccacgccatcatgagattagatc ttgctggacgtgatctcacagattacctcatgaagatcctcacagagcgtggctactcgttcaccaccacagccgagaga gaaatcgtcagagacatcaaagaaaaattgtgttatgttgccttggactttgaacaagaaatggctaccgccgcgtcatc atcatctttagagaagagttacgaacttcccgacggtcaggtcatcaccattggtaacgaaaggttcagatgtcccgagg ctttattccagccatctttcctcggtatggaatctgcaggtatccacgaaacaacatacaacagtataatgaagtgtgac gtagacattcgtaaagacttgtacgctaacaccgtgttatcaggcggtaccactatgtacccaggtatcgctgaccgtat gcagaaagaaatcacatctcttgctccaagcacaatgaaaatcaaagttatagctccaccagagaggaaatactcagttt ggattggtggatctatcctcgcttctctctccaccttccagcagatgtggatcagcaaacaggaatacgacgagtccggt ccatccatcgtccacaggaaatgcttctaa |
|
Protein
| Protein ID | pfu_aug1.0_352.1_36513.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_352.1_36513.t1 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET FNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAER EIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCD VDIRKDLYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKVIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG PSIVHRKCF |
|