Gene
Gene Model ID | pfu_aug1.0_3553.1_30443 |
---|---|
Locus | scaffold3553.1 : 39426 ... 43065 : + |
To GenomeBrowser | scaffold3553.1:39426..43065 |
Genes list of scaffold | scaffold3553.1 |
Synonym | NA |
Manual annotation
Study field | mitochondrial |
---|---|
Gene name | cytochrome b |
Description | 99% identity with Pinctada fucata mitochondrial CYTB mRNA for cytochrome b, complete cds (GenBank: AB684317.1) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3553.1_30443.t1 | 1 | 1 | Cytochrom_B_N_2 | 19 | 71 | 5.2e-14 | 52.3 | 8.0e-18 | 5.9e-14 | 52.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3553.1_30443.t1 | gi|170787164|gb|ACB38226.1| | cytochrome b, partial (mitochondrion) [Tyto longimembris] | 2.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 2 |
8-16cell | 2 |
egg-Dshape | 3 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 3 |
Transcript
Transcript ID | pfu_aug1.0_3553.1_30443.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3553.1_30443.t1 atgcgggacgttcagggggggtggttcgtgcgcaactgtcatgttagaggggctaactttatatttatttgcgtctactt gcatattggtcgggggctgtattatgggtcgtatttgataaagagcgtctggtttagagggatagcaatccttattctcc taatggccatcgccttcttaggttatgtgttgccttggggcaggatgtcctactga |
Protein
Protein ID | pfu_aug1.0_3553.1_30443.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3553.1_30443.t1 MRDVQGGWFVRNCHVRGANFIFICVYLHIGRGLYYGSYLIKSVWFRGIAILILLMAIAFLGYVLPWGRMSY |