Gene
| Gene Model ID | pfu_aug1.0_3558.1_08659 |
|---|---|
| Locus | scaffold3558.1 : 7754 ... 11855 : - |
| To GenomeBrowser | scaffold3558.1:7754..11855 |
| Genes list of scaffold | scaffold3558.1 |
| Synonym | pfu_aug2.0_2361.1_05500 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-PTFa2 |
| Description | Best hit to NP_690862 fer3-like protein [Homo sapiens] with 7e-31 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3558.1_08659.t1 | 1 | 1 | HLH | 129 | 180 | 1.6e-15 | 56.5 | 1.8e-19 | 2.6e-15 | 55.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3558.1_08659.t1 | gi|291226431|ref|XP_002733196.1| | PREDICTED: myoblast determination protein 1 homolog [Saccoglossus kowalevskii] | 1.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3558.1_08659.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3558.1_08659.t1 atggagggacacgtgtcagaacatagcacttcagtatacgacaaccagagttcactacctagctacgctactgcaagtag ttcttccggaagtcttgtccaagcaatgtatgcagattacggcagtgactggcatactgccccggtggacccaacgcggg caacgcccgagtacccaacatatatgggctatacccatgtcgcccagggcgatttagtgacaaatggggcttattggccc ggcgaaattggcatgcatccgagtttgccctacaacccgtatgcacacccggaatccatgcagggtttggattttagtca gcactcaccgcagagtttgggcaaaaacggcaaaccgaaacggaagcgtgtacagactgtgacgcagagaagagctgcaa atatcagagagcgaagacgcatgtttcatctaaatgaggctttcgacgatctcagaaaaagacttccagcttttaattac gaaaagagattatcaagaatcgaaactctgaggttggctattacatacatttctttcatgaaggacataagcgacgggga agatccgaaaaacgtaaagttaaaaacccataaatccagtgacattttgtatcctgaattatcagaaaatatgaacagtg acgattcgctaagttcgtga |
|
Protein
| Protein ID | pfu_aug1.0_3558.1_08659.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3558.1_08659.t1 MEGHVSEHSTSVYDNQSSLPSYATASSSSGSLVQAMYADYGSDWHTAPVDPTRATPEYPTYMGYTHVAQGDLVTNGAYWP GEIGMHPSLPYNPYAHPESMQGLDFSQHSPQSLGKNGKPKRKRVQTVTQRRAANIRERRRMFHLNEAFDDLRKRLPAFNY EKRLSRIETLRLAITYISFMKDISDGEDPKNVKLKTHKSSDILYPELSENMNSDDSLSS |
|