Gene
Gene Model ID | pfu_aug1.0_3558.1_08659 |
---|---|
Locus | scaffold3558.1 : 7754 ... 11855 : - |
To GenomeBrowser | scaffold3558.1:7754..11855 |
Genes list of scaffold | scaffold3558.1 |
Synonym | pfu_aug2.0_2361.1_05500 |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-PTFa2 |
Description | Best hit to NP_690862 fer3-like protein [Homo sapiens] with 7e-31 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3558.1_08659.t1 | 1 | 1 | HLH | 129 | 180 | 1.6e-15 | 56.5 | 1.8e-19 | 2.6e-15 | 55.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3558.1_08659.t1 | gi|291226431|ref|XP_002733196.1| | PREDICTED: myoblast determination protein 1 homolog [Saccoglossus kowalevskii] | 1.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
trochophore | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_3558.1_08659.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3558.1_08659.t1 atggagggacacgtgtcagaacatagcacttcagtatacgacaaccagagttcactacctagctacgctactgcaagtag ttcttccggaagtcttgtccaagcaatgtatgcagattacggcagtgactggcatactgccccggtggacccaacgcggg caacgcccgagtacccaacatatatgggctatacccatgtcgcccagggcgatttagtgacaaatggggcttattggccc ggcgaaattggcatgcatccgagtttgccctacaacccgtatgcacacccggaatccatgcagggtttggattttagtca gcactcaccgcagagtttgggcaaaaacggcaaaccgaaacggaagcgtgtacagactgtgacgcagagaagagctgcaa atatcagagagcgaagacgcatgtttcatctaaatgaggctttcgacgatctcagaaaaagacttccagcttttaattac gaaaagagattatcaagaatcgaaactctgaggttggctattacatacatttctttcatgaaggacataagcgacgggga agatccgaaaaacgtaaagttaaaaacccataaatccagtgacattttgtatcctgaattatcagaaaatatgaacagtg acgattcgctaagttcgtga |
Protein
Protein ID | pfu_aug1.0_3558.1_08659.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3558.1_08659.t1 MEGHVSEHSTSVYDNQSSLPSYATASSSSGSLVQAMYADYGSDWHTAPVDPTRATPEYPTYMGYTHVAQGDLVTNGAYWP GEIGMHPSLPYNPYAHPESMQGLDFSQHSPQSLGKNGKPKRKRVQTVTQRRAANIRERRRMFHLNEAFDDLRKRLPAFNY EKRLSRIETLRLAITYISFMKDISDGEDPKNVKLKTHKSSDILYPELSENMNSDDSLSS |