Gene
| Gene Model ID | pfu_aug1.0_3587.1_08665 |
|---|---|
| Locus | scaffold3587.1 : 15846 ... 23936 : + |
| To GenomeBrowser | scaffold3587.1:15846..23936 |
| Genes list of scaffold | scaffold3587.1 |
| Synonym | pfu_aug2.0_1167.1_24737 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3587.1_08665.t1 | 1 | 1 | TPR_11 | 87 | 159 | 2.8e-11 | 42.8 | 5.1e-14 | 1.5e-10 | 40.5 |
| pfu_aug1.0_3587.1_08665.t1 | 3 | 1 | TPR_1 | 88 | 116 | 7.0e-06 | 25.4 | 4.1e-06 | 0.012 | 15.1 |
| pfu_aug1.0_3587.1_08665.t1 | 3 | 2 | TPR_1 | 126 | 140 | 7.0e-06 | 25.4 | 0.1 | 310.0 | 1.2 |
| pfu_aug1.0_3587.1_08665.t1 | 3 | 3 | TPR_1 | 141 | 167 | 7.0e-06 | 25.4 | 0.00023 | 0.68 | 9.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3587.1_08665.t1 | gi|311259275|ref|XP_003128021.1| | PREDICTED: tetratricopeptide repeat protein 4 isoform X1 [Sus scrofa] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3587.1_08665.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3587.1_08665.t1 atggcagcgaagagattaccaaacgagacaaacgaggagatgactaggagactgaacagagaattggagcagtttataga ggagaaggcagctgaagctgcagagagaagagcaaataatcctgaaaaatatgatgcctttatgaaagatatcgagaacc acccagcttttatgacggaaattgaccctagcaaacctcttaactctgaaatggaaggtctaatgagactgaagtatgag acagagaatccaataggtagggctgaggcctacaaagatgacggaaacaatgaattcaaaaagaagcggtatgatattgc tatcgacaattatacagaggcaatcaagtgcaaatgtcctgacaaagaattgaatgccatactttattctaatagagccg ctgcacaatttcatagaggtgcccagtgctgcatggagatgaagaaatacaaggatgctggtcagtggtgtgactcagga ctaattattgaaccaaaaaatgaaaagtttctggagatgaaaacaaagtcggacaaactccatcgagcacaggaaagaga taaacgtagagaggagatgaaagaaagaaaagacaacgaggaagagaagaaactgctacaaactatacagagtcgaggca taaggctagcaggaatgaagcaatcacagaaagataagaaactggatcctctactgttaacaaatctggaggtacacaat ccaagcggagcaaaagtccacgctgacactgacggaacgttacactggcctgtgttattactctatccagagtacacaca gtctgattacatagaggacttcaatgagcatcaaaggtctgtactctactttgctggttaa |
|
Protein
| Protein ID | pfu_aug1.0_3587.1_08665.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3587.1_08665.t1 MAAKRLPNETNEEMTRRLNRELEQFIEEKAAEAAERRANNPEKYDAFMKDIENHPAFMTEIDPSKPLNSEMEGLMRLKYE TENPIGRAEAYKDDGNNEFKKKRYDIAIDNYTEAIKCKCPDKELNAILYSNRAAAQFHRGAQCCMEMKKYKDAGQWCDSG LIIEPKNEKFLEMKTKSDKLHRAQERDKRREEMKERKDNEEEKKLLQTIQSRGIRLAGMKQSQKDKKLDPLLLTNLEVHN PSGAKVHADTDGTLHWPVLLLYPEYTQSDYIEDFNEHQRSVLYFAG |
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