Gene
| Gene Model ID | pfu_aug1.0_36021.1_48215 |
|---|---|
| Locus | scaffold36021.1 : 1 ... 4095 : + |
| To GenomeBrowser | scaffold36021.1:1..4095 |
| Genes list of scaffold | scaffold36021.1 |
| Synonym | pfu_aug2.0_4240.1_02588 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_36021.1_48215.t1 | 3 | 1 | WD40 | 6 | 34 | 4.1e-09 | 35.9 | 3.0e-06 | 0.045 | 13.6 |
| pfu_aug1.0_36021.1_48215.t1 | 3 | 2 | WD40 | 43 | 76 | 4.1e-09 | 35.9 | 1.8e-09 | 2.6e-05 | 23.9 |
| pfu_aug1.0_36021.1_48215.t1 | 3 | 3 | WD40 | 122 | 134 | 4.1e-09 | 35.9 | 0.076 | 1100.0 | -0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_36021.1_48215.t1 | gi|291242815|ref|XP_002741301.1| | PREDICTED: F-box/WD repeat-containing protein 2-like [Saccoglossus kowalevskii] | 3.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_36021.1_48215.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_36021.1_48215.t1 aagcacatcaaagtgatagaagctcacactgtgtgtcaggtgaaatttgacgatcagtatgtctacacagcctcctacga caacactgcggcatcatgggatatacatacaggtcgcttacactgccgttacatcggccattttaatggagttttgtcga tcgatgcttggagggagagaaaactggtgataactgggtcggcagattccactatcaagttgtggcatttggacaatggc cagctcctagatagtttctccagatttcattcagggtggataaaaaatgttcgaattctgtcttgcgagacgttaagaat taccgagaacagagaggaaatcgtctctatgcagctattatcagtgttgtctgcagacgctaaaggtaaaattgttatat ggactgttacagtcataactgatagggacggagatatgagcatacagaatttcaagaaagcgttcgaatttccgcactgc ataaatcaaccattgatcatgaacacaaatcaaatttgcatttcaaggaatgcctcaaaaagtgcaaaaactgattccag tctttcattttacaaagttgagactgattttaagataaattctgtggcggttagattggagagagaagtaacgattccca atttcatacaggaaaacgggatgttagttggagtgggtagaagatttgcagtgtttcatgtcgttgatgacagaagtttt aacattggctcatttatatgtgtgtacgacatggaaacggaggacttgttttctacgatacaagttccacatgaaagtta ttatggtgagccgccatgtctgggagacgcacattggctggatggatttggcgaatgtaaaagccttttctatgttgccg tagtgatacctgaaaactttacaattacgctttactatacagacagaagtaaaaaggacattactataaaccatgagaca tga |
|
Protein
| Protein ID | pfu_aug1.0_36021.1_48215.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_36021.1_48215.t1 KHIKVIEAHTVCQVKFDDQYVYTASYDNTAASWDIHTGRLHCRYIGHFNGVLSIDAWRERKLVITGSADSTIKLWHLDNG QLLDSFSRFHSGWIKNVRILSCETLRITENREEIVSMQLLSVLSADAKGKIVIWTVTVITDRDGDMSIQNFKKAFEFPHC INQPLIMNTNQICISRNASKSAKTDSSLSFYKVETDFKINSVAVRLEREVTIPNFIQENGMLVGVGRRFAVFHVVDDRSF NIGSFICVYDMETEDLFSTIQVPHESYYGEPPCLGDAHWLDGFGECKSLFYVAVVIPENFTITLYYTDRSKKDITINHET |
|