Gene
| Gene Model ID | pfu_aug1.0_3604.1_52033 |
|---|---|
| Locus | scaffold3604.1 : 13786 ... 28486 : + |
| To GenomeBrowser | scaffold3604.1:13786..28486 |
| Genes list of scaffold | scaffold3604.1 |
| Synonym | pfu_aug2.0_170.1_00368 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3604.1_52033.t1 | 1 | 1 | NTF2 | 121 | 195 | 8.1e-06 | 26.2 | 6.4e-09 | 1.4e-05 | 25.4 |
| pfu_aug1.0_3604.1_52033.t1 | 1 | 1 | TAP_C | 246 | 296 | 4.1e-23 | 80.5 | 4.2e-26 | 8.8e-23 | 79.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3604.1_52033.t1 | gi|60416183|gb|AAH90720.1| | Nxf1 protein [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3604.1_52033.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3604.1_52033.t1 atgacgtgtgtagtcaaaatcatacaggaaaacattcctgagttggaatgcctagatgttagtcagaaccacatatttaa actagatggtctgagttctctggtagaacacacaccaaacttgaccaaactcaacctgggagctaataaagatggccatg acctaccacctcccatcaagtttgaccttgaaactcagtcagaactaccagactcaaaggcattattttctctcactgca gcttttaacccaaacattgaatacagccagccgaaactgagcgtgtacattgtggatagcagaaatatgctcaagaacag agataacgcacggcagaataaatgtctgaagaagggacagttaaacgtagtctcccacctgacacagttacctaagacca cacatgattataattcctttgttatagatgtagatcattgctcgcaaaatttactgagtttttctgtggaaggagttttc aaggaaggtgacagtaaatctgacagaccacctgtacgatcattcagcagaagatttgttacaattcctagaggtggtgg gatggtgatttctaatgacatgttaacaataacaaatgccagtagagatcagtaccagaaagcatttaagcacccagcac ccaccccttcatcaagtcctgtccctgatgcctccccagcgccccccttcccgtctgctactcctcaggctggggctgcg tttagtgatttacaacaacagatggtagccaagttctctgaggtatcaggcatgaacaatgagtggtctgtaaattgcct tgagcagaataactgggattttgaaaaagcaggtcaagtgtttatggacttaaagaaccaaaataagattccaccagaag cttttgtgaagtga |
|
Protein
| Protein ID | pfu_aug1.0_3604.1_52033.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3604.1_52033.t1 MTCVVKIIQENIPELECLDVSQNHIFKLDGLSSLVEHTPNLTKLNLGANKDGHDLPPPIKFDLETQSELPDSKALFSLTA AFNPNIEYSQPKLSVYIVDSRNMLKNRDNARQNKCLKKGQLNVVSHLTQLPKTTHDYNSFVIDVDHCSQNLLSFSVEGVF KEGDSKSDRPPVRSFSRRFVTIPRGGGMVISNDMLTITNASRDQYQKAFKHPAPTPSSSPVPDASPAPPFPSATPQAGAA FSDLQQQMVAKFSEVSGMNNEWSVNCLEQNNWDFEKAGQVFMDLKNQNKIPPEAFVK |
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