Gene
| Gene Model ID | pfu_aug1.0_3608.1_37643 |
|---|---|
| Locus | scaffold3608.1 : 38747 ... 64165 : - |
| To GenomeBrowser | scaffold3608.1:38747..64165 |
| Genes list of scaffold | scaffold3608.1 |
| Synonym | pfu_aug2.0_470.1_00795 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3608.1_37643.t1 | 1 | 1 | LIM | 7 | 45 | 1.3e-08 | 34.7 | 6.0e-12 | 1.3e-08 | 34.7 |
| pfu_aug1.0_3608.1_37643.t1 | 2 | 1 | Nebulin | 54 | 82 | 5.5e-16 | 57.3 | 5.8e-12 | 1.2e-08 | 34.0 |
| pfu_aug1.0_3608.1_37643.t1 | 2 | 2 | Nebulin | 89 | 110 | 5.5e-16 | 57.3 | 6.3e-08 | 0.00013 | 21.3 |
| pfu_aug1.0_3608.1_37643.t1 | 1 | 1 | SH3_2 | 217 | 270 | 2.2e-06 | 27.0 | 2.1e-09 | 4.6e-06 | 26.0 |
| pfu_aug1.0_3608.1_37643.t1 | 1 | 1 | SH3_1 | 218 | 265 | 1.4e-11 | 43.5 | 1.2e-14 | 2.5e-11 | 42.7 |
| pfu_aug1.0_3608.1_37643.t1 | 1 | 1 | SH3_9 | 219 | 269 | 1.1e-11 | 44.1 | 8.8e-15 | 1.9e-11 | 43.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3608.1_37643.t1 | gi|340709788|ref|XP_003393483.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_3608.1_37643.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3608.1_37643.t1 atgatgattttgtacaattggcttactaagtcatggcacaaaggctgcttcaaatgtcaggagtgtaatatgacgctcaa catgaagaactacaaaggctacaataaactaccatactgcaatgcacattatcccacaaccaaacacacggtagtagcag acacaccagaggccagaagaatagcagaaaacacaaaaatacaaagtaatattaagtaccatgaagattttgagaagatg aagggtaaaaaagcgtcggtggtggacgaccctgaactgatgaggataaaacagaacacggcaatacaaagtaacataga gtatcacaagacaagagatcagttagctcaaatggaacagagacgacccgcgcacgaacagacagacaggaatttcaatg cccggagaacatcttcgtcaagttctgacccgagactcgagccggctggatcgtctagacgtgttggatctatcgcagat tacgacccgatgaatgaaaactatggctctatcagtggtcagtacagggaaccccctagaaaccagcaaccagcacctca acaacatcaacaacaacaacaataccagcaacctcctcctcctcaacctgtacagcaaccacagcaacctgttagtaaag agatggtatgccaggcaatgtacgattacacggccgcagatacagatgaagtcagttttatggacggtgacctaattaga cattgtcagccgatagacgcaggatggatggagggaacggtagaacgcactgggcagcgaggaatgttaccgtcaaatta cgtcgagccacttgcccgctaa |
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Protein
| Protein ID | pfu_aug1.0_3608.1_37643.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3608.1_37643.t1 MMILYNWLTKSWHKGCFKCQECNMTLNMKNYKGYNKLPYCNAHYPTTKHTVVADTPEARRIAENTKIQSNIKYHEDFEKM KGKKASVVDDPELMRIKQNTAIQSNIEYHKTRDQLAQMEQRRPAHEQTDRNFNARRTSSSSSDPRLEPAGSSRRVGSIAD YDPMNENYGSISGQYREPPRNQQPAPQQHQQQQQYQQPPPPQPVQQPQQPVSKEMVCQAMYDYTAADTDEVSFMDGDLIR HCQPIDAGWMEGTVERTGQRGMLPSNYVEPLAR |
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