Gene
| Gene Model ID | pfu_aug1.0_36251.1_41002 |
|---|---|
| Locus | scaffold36251.1 : 132 ... 6495 : - |
| To GenomeBrowser | scaffold36251.1:132..6495 |
| Genes list of scaffold | scaffold36251.1 |
| Synonym | pfu_aug2.0_1088.1_28045 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_36251.1_41002.t1 | 2 | 1 | Ank_4 | 1 | 50 | 1.2e-23 | 83.0 | 7.7e-13 | 1.9e-09 | 37.7 |
| pfu_aug1.0_36251.1_41002.t1 | 1 | 1 | Ank_2 | 1 | 86 | 1.5e-23 | 82.9 | 9.4e-27 | 2.3e-23 | 82.3 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 1 | Ank | 1 | 26 | 3.4e-21 | 73.9 | 3.6e-09 | 9.0e-06 | 25.2 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 1 | Ank_5 | 1 | 29 | 4.9e-21 | 74.2 | 3.9e-07 | 0.00096 | 19.3 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 1 | Ank_3 | 1 | 23 | 1.7e-16 | 58.6 | 2.8e-07 | 0.00068 | 19.6 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 2 | Ank_5 | 31 | 70 | 4.9e-21 | 74.2 | 4.0e-12 | 9.8e-09 | 35.1 |
| pfu_aug1.0_36251.1_41002.t1 | 2 | 2 | Ank_4 | 32 | 82 | 1.2e-23 | 83.0 | 1.8e-16 | 4.4e-13 | 49.3 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 2 | Ank | 32 | 60 | 3.4e-21 | 73.9 | 3.1e-11 | 7.8e-08 | 31.7 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 2 | Ank_3 | 32 | 56 | 1.7e-16 | 58.6 | 1.3e-08 | 3.1e-05 | 23.7 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 3 | Ank_5 | 54 | 103 | 4.9e-21 | 74.2 | 7.4e-10 | 1.8e-06 | 27.9 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 3 | Ank_3 | 62 | 85 | 1.7e-16 | 58.6 | 8.4e-05 | 0.21 | 11.9 |
| pfu_aug1.0_36251.1_41002.t1 | 3 | 3 | Ank | 62 | 94 | 3.4e-21 | 73.9 | 1.8e-05 | 0.044 | 13.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_36251.1_41002.t1 | gi|294460531|gb|ADE75841.1| | unknown [Picea sitchensis] | 5.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_36251.1_41002.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_36251.1_41002.t1 cattatgcagcaaggaatggtcacctgaaagtatgtgaaatactcctaaaggcaggagctacagcaaatataaaaacaag gtcaggagacgtgtcacccctacatagagctgcttacaagggacatgtagatataatgaaacttctaattaagtacaaag ctgatccagaatgtcaagattctgatggaaaaactgccatgcacaaggctacagaagaaggacaatgtgaagcagtaaag ctacttatggatgtgtgcccagaatgtgcaaatataaaagattttaaaggaaaaactcccatagactacataaaagacga taaatctaacatatttacaatattgaaatctactagtgattga |
|
Protein
| Protein ID | pfu_aug1.0_36251.1_41002.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_36251.1_41002.t1 HYAARNGHLKVCEILLKAGATANIKTRSGDVSPLHRAAYKGHVDIMKLLIKYKADPECQDSDGKTAMHKATEEGQCEAVK LLMDVCPECANIKDFKGKTPIDYIKDDKSNIFTILKSTSD |
|