Gene
| Gene Model ID | pfu_aug1.0_363.1_29202 |
|---|---|
| Locus | scaffold363.1 : 17238 ... 25595 : - |
| To GenomeBrowser | scaffold363.1:17238..25595 |
| Genes list of scaffold | scaffold363.1 |
| Synonym | pfu_aug2.0_99.1_30205 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_363.1_29202.t1 | 1 | 1 | PhyH | 49 | 275 | 5.3e-19 | 69.0 | 5.8e-23 | 8.5e-19 | 68.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_363.1_29202.t1 | gi|261289279|ref|XP_002603083.1| | hypothetical protein BRAFLDRAFT_63284 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_363.1_29202.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_363.1_29202.t1 atgtcgtctgctacagaggcgccgcgtgttcttcctggattcacagacgaggcttttcctaacaatttcaacctgaatgc cagaccggtggtgaaggaacggaaggaggggcaactgtcggacgacaaaattaagcagtttttcgaaaatggttacgtga tcgtagatagctttttcaccagagaagagttagatccctgtaaagatgccatcaacgacttggtggaggaattggcgcag aagttgtaccgaacgggacgaatcaaaaatttgtacagtggctatggattttatgaaagactgacacatatagagaaaga ctttcccggcgctaacatcatactacataaatatggcgttcttccgcaggcttttaaaaacttgtggagcaatgagcgac tcctgaacgtggtagaacagctgattggtccagacatcgccgggcatccagtctggaacctgcgcactaagacacctcaa aacgaggctaccacagtaccctggcatcaagacacggcataccttgacactcggtcttacagtgtgatgcagcctacagc gtggattcctttattaaacgcagacgagagcaacggatgcatgcaggttgcaaacaaaggtcacaagacagggaagacag cacgtcatcagtgttgctatggtggcacgtggtacgtcatgctagaagaggaggaaatggcagaaactctagatatagac ccacaaaaggactttatcagttgtccaataccttacggaggcatgcttctactgaacaacctaataccacacagaagcct tccaaacatttccaaacagatccgttggagtttggacttgcgatggcagaaccccaccctaccctgtggattttacgaca tgaaaagcaccgtactgatgagaacatctaaagaccccggatataaaatagactggtcaccgtttgaaagcgtggacaga cacgagaagcaaagagaggctgtgaaagatatggaacttctaccgcaatctgaggagaaagagtttgacacgactataca aggtccgtggatgaagaaatgggacatagtgcacatgaaccaacatacggaaaggctgacagaagatgtgtttagttctt ggcatgatcataaagccaaagcatag |
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Protein
| Protein ID | pfu_aug1.0_363.1_29202.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_363.1_29202.t1 MSSATEAPRVLPGFTDEAFPNNFNLNARPVVKERKEGQLSDDKIKQFFENGYVIVDSFFTREELDPCKDAINDLVEELAQ KLYRTGRIKNLYSGYGFYERLTHIEKDFPGANIILHKYGVLPQAFKNLWSNERLLNVVEQLIGPDIAGHPVWNLRTKTPQ NEATTVPWHQDTAYLDTRSYSVMQPTAWIPLLNADESNGCMQVANKGHKTGKTARHQCCYGGTWYVMLEEEEMAETLDID PQKDFISCPIPYGGMLLLNNLIPHRSLPNISKQIRWSLDLRWQNPTLPCGFYDMKSTVLMRTSKDPGYKIDWSPFESVDR HEKQREAVKDMELLPQSEEKEFDTTIQGPWMKKWDIVHMNQHTERLTEDVFSSWHDHKAKA |
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