Gene
| Gene Model ID | pfu_aug1.0_3633.1_52046 |
|---|---|
| Locus | scaffold3633.1 : 37946 ... 53575 : + |
| To GenomeBrowser | scaffold3633.1:37946..53575 |
| Genes list of scaffold | scaffold3633.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-AHR-related |
| Description | Best hit to ACL80140 aryl hydrocarbon receptor [Chlamys farreri] with e=0.0 by a BLASTP search against NCBI nr database. The predicted protein has a single PAS_3 domain. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3633.1_52046.t1 | 1 | 1 | PAS_3 | 1 | 76 | 1.2e-15 | 57.3 | 5.5e-19 | 2.7e-15 | 56.2 |
| pfu_aug1.0_3633.1_52046.t1 | 2 | 1 | PAS_11 | 2 | 83 | 5.8e-10 | 39.0 | 4.6e-12 | 2.3e-08 | 33.9 |
| pfu_aug1.0_3633.1_52046.t1 | 2 | 2 | PAS_11 | 356 | 387 | 5.8e-10 | 39.0 | 0.023 | 120.0 | 2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3633.1_52046.t1 | gi|227908937|gb|ACL80140.3| | aryl hydrocarbon receptor [Azumapecten farreri] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_3633.1_52046.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3633.1_52046.t1 atgtttggatactctgacagagaactagcggtcaagtccggttatgaccttgtccatccagatgacctaacatacttctc agctgctcaccaagaactgataaagacgggtagttctgggctcatcgcttaccgctggtacaccaaagagttccgatggt tatggttgcagtctagttgtaaagttatctacaaaaacagtaagccggacttcgtcatctgcacgcaccgacaattaact gacgacgagggacaagatttattccataaaagggggaatgagtttaaattgccgtatccacttttggaccttgatgtgtg ttcaggctttgatttccctaatgacgatttaatttcaaaaatgaaaaatgggaaaaataagaaacagaagaaccaagttc gagatggctttgttcagaataatggtcggaagaagaagggcgttgccagagaaccgctaaatggactgaatggttattca ggatattctcagtttaatgggtacgaaggtggagaatttaaaacagacatgttgtacccatacccgtctagtaattttgc aatggaatctgatatctacaggggttaccctggacttgccagctcaatgtactctgcgcctgattcatacagacttgcgg aaagtgataaacatagttatacaaacggatattaccttgacccccacagacaataccaacaccccctgggttaccatggt aacagttattctgattttgtaatgccatctacaaagtacagttacgattctgtgtctaagtatggattagataattacag tttagatcttgccaaaaaagttcactacggcgatgacatgtcacgatacgacaacgattttagaaaatatgcatacgaat acggaggagaacgatttcctacgagattaaatggttccttagaacctgtggacttgcgctcctctgccatgtataatggt gctccttttgtgaatggagtggatggaatgatgggacatgggggttgtctcccttcgtcttcattattcaaaccagactt tactccaaatgtactgtcgaaagaaacaaaagtaatatgttctccttcagacttggttcataatcagggattcagtccat ctgtaccacttcatcacagttccgtcattaaaaatgcagctagtcctcgttctcttcattcacagtcgtctagaacatct aattcagaccaaatggggagtcctacaaacatttataataattcaggaagaactaacatagtaaacaatagttcgtcatg gcattgtcaaaagactggtcaggtcatagtacctagccctaattctacgcccggttcagaccacgttggaagtcctaagc aaaatggtgtgaatggaaacaaaacagagacagtgtcccttagcatagccagtagccctgcctcgggagcaacgcctgct tctgttatacatacagctgttgccaacaaatcgacacctcataacagaacgaacggctccaaattctgcgaggcgtctat ccagatgcgtagttga |
|
Protein
| Protein ID | pfu_aug1.0_3633.1_52046.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3633.1_52046.t1 MFGYSDRELAVKSGYDLVHPDDLTYFSAAHQELIKTGSSGLIAYRWYTKEFRWLWLQSSCKVIYKNSKPDFVICTHRQLT DDEGQDLFHKRGNEFKLPYPLLDLDVCSGFDFPNDDLISKMKNGKNKKQKNQVRDGFVQNNGRKKKGVAREPLNGLNGYS GYSQFNGYEGGEFKTDMLYPYPSSNFAMESDIYRGYPGLASSMYSAPDSYRLAESDKHSYTNGYYLDPHRQYQHPLGYHG NSYSDFVMPSTKYSYDSVSKYGLDNYSLDLAKKVHYGDDMSRYDNDFRKYAYEYGGERFPTRLNGSLEPVDLRSSAMYNG APFVNGVDGMMGHGGCLPSSSLFKPDFTPNVLSKETKVICSPSDLVHNQGFSPSVPLHHSSVIKNAASPRSLHSQSSRTS NSDQMGSPTNIYNNSGRTNIVNNSSSWHCQKTGQVIVPSPNSTPGSDHVGSPKQNGVNGNKTETVSLSIASSPASGATPA SVIHTAVANKSTPHNRTNGSKFCEASIQMRS |
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