Gene
Gene Model ID | pfu_aug1.0_3633.1_52046 |
---|---|
Locus | scaffold3633.1 : 37946 ... 53575 : + |
To GenomeBrowser | scaffold3633.1:37946..53575 |
Genes list of scaffold | scaffold3633.1 |
Synonym | NA |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-AHR-related |
Description | Best hit to ACL80140 aryl hydrocarbon receptor [Chlamys farreri] with e=0.0 by a BLASTP search against NCBI nr database. The predicted protein has a single PAS_3 domain. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3633.1_52046.t1 | 1 | 1 | PAS_3 | 1 | 76 | 1.2e-15 | 57.3 | 5.5e-19 | 2.7e-15 | 56.2 |
pfu_aug1.0_3633.1_52046.t1 | 2 | 1 | PAS_11 | 2 | 83 | 5.8e-10 | 39.0 | 4.6e-12 | 2.3e-08 | 33.9 |
pfu_aug1.0_3633.1_52046.t1 | 2 | 2 | PAS_11 | 356 | 387 | 5.8e-10 | 39.0 | 0.023 | 120.0 | 2.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3633.1_52046.t1 | gi|227908937|gb|ACL80140.3| | aryl hydrocarbon receptor [Azumapecten farreri] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_3633.1_52046.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3633.1_52046.t1 atgtttggatactctgacagagaactagcggtcaagtccggttatgaccttgtccatccagatgacctaacatacttctc agctgctcaccaagaactgataaagacgggtagttctgggctcatcgcttaccgctggtacaccaaagagttccgatggt tatggttgcagtctagttgtaaagttatctacaaaaacagtaagccggacttcgtcatctgcacgcaccgacaattaact gacgacgagggacaagatttattccataaaagggggaatgagtttaaattgccgtatccacttttggaccttgatgtgtg ttcaggctttgatttccctaatgacgatttaatttcaaaaatgaaaaatgggaaaaataagaaacagaagaaccaagttc gagatggctttgttcagaataatggtcggaagaagaagggcgttgccagagaaccgctaaatggactgaatggttattca ggatattctcagtttaatgggtacgaaggtggagaatttaaaacagacatgttgtacccatacccgtctagtaattttgc aatggaatctgatatctacaggggttaccctggacttgccagctcaatgtactctgcgcctgattcatacagacttgcgg aaagtgataaacatagttatacaaacggatattaccttgacccccacagacaataccaacaccccctgggttaccatggt aacagttattctgattttgtaatgccatctacaaagtacagttacgattctgtgtctaagtatggattagataattacag tttagatcttgccaaaaaagttcactacggcgatgacatgtcacgatacgacaacgattttagaaaatatgcatacgaat acggaggagaacgatttcctacgagattaaatggttccttagaacctgtggacttgcgctcctctgccatgtataatggt gctccttttgtgaatggagtggatggaatgatgggacatgggggttgtctcccttcgtcttcattattcaaaccagactt tactccaaatgtactgtcgaaagaaacaaaagtaatatgttctccttcagacttggttcataatcagggattcagtccat ctgtaccacttcatcacagttccgtcattaaaaatgcagctagtcctcgttctcttcattcacagtcgtctagaacatct aattcagaccaaatggggagtcctacaaacatttataataattcaggaagaactaacatagtaaacaatagttcgtcatg gcattgtcaaaagactggtcaggtcatagtacctagccctaattctacgcccggttcagaccacgttggaagtcctaagc aaaatggtgtgaatggaaacaaaacagagacagtgtcccttagcatagccagtagccctgcctcgggagcaacgcctgct tctgttatacatacagctgttgccaacaaatcgacacctcataacagaacgaacggctccaaattctgcgaggcgtctat ccagatgcgtagttga |
Protein
Protein ID | pfu_aug1.0_3633.1_52046.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3633.1_52046.t1 MFGYSDRELAVKSGYDLVHPDDLTYFSAAHQELIKTGSSGLIAYRWYTKEFRWLWLQSSCKVIYKNSKPDFVICTHRQLT DDEGQDLFHKRGNEFKLPYPLLDLDVCSGFDFPNDDLISKMKNGKNKKQKNQVRDGFVQNNGRKKKGVAREPLNGLNGYS GYSQFNGYEGGEFKTDMLYPYPSSNFAMESDIYRGYPGLASSMYSAPDSYRLAESDKHSYTNGYYLDPHRQYQHPLGYHG NSYSDFVMPSTKYSYDSVSKYGLDNYSLDLAKKVHYGDDMSRYDNDFRKYAYEYGGERFPTRLNGSLEPVDLRSSAMYNG APFVNGVDGMMGHGGCLPSSSLFKPDFTPNVLSKETKVICSPSDLVHNQGFSPSVPLHHSSVIKNAASPRSLHSQSSRTS NSDQMGSPTNIYNNSGRTNIVNNSSSWHCQKTGQVIVPSPNSTPGSDHVGSPKQNGVNGNKTETVSLSIASSPASGATPA SVIHTAVANKSTPHNRTNGSKFCEASIQMRS |