Gene
| Gene Model ID | pfu_aug1.0_3652.1_44719 |
|---|---|
| Locus | scaffold3652.1 : 19306 ... 26666 : + |
| To GenomeBrowser | scaffold3652.1:19306..26666 |
| Genes list of scaffold | scaffold3652.1 |
| Synonym | pfu_aug2.0_86.1_20198 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3652.1_44719.t1 | 1 | 1 | Proteasome_A_N | 5 | 27 | 7.4e-15 | 53.9 | 2.9e-18 | 1.4e-14 | 53.0 |
| pfu_aug1.0_3652.1_44719.t1 | 1 | 1 | Proteasome | 28 | 213 | 0.0 | 212.7 | 0.0 | 0.0 | 212.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3652.1_44719.t1 | gi|260805606|ref|XP_002597677.1| | hypothetical protein BRAFLDRAFT_279789 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3652.1_44719.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3652.1_44719.t1 atgagcgatagatacgatcgtgcaattactgttttctctcctgacggacatttatttcaagtagaatatgctcaggaagc cgtaaagaaaggttcaacagctgtcggagtgagaggcaagaatatagtggtccttggtgttgagaagaaagctgtagcaa agttacaggaggacagaactgtacgaaagatcgctctgcttgatgaccatgtcgcattggcttttgcaggtctgacggca gatgctcgtatcctgatcaaccgagcccgagtagaatgtcaaagccacaaactaacggtggaggatccagttacactgga gtatataacaagatatatagctcaactcaaacagaaatatacacagagtaacggaaggcgtccgtttggtttatcatcac ttattataggttttgactatgatggtaccccacatctttatcagactgacccctcaggaacttaccatgaatggaaggcc aacgcaataggaaggagtgctaagccggtcagggaattcctggagaagaattacacagaggaagtagccgttaatgacga cgagtgtatcaaattggcccttaaagctttgttggaggtcgtacagtccggcgcaaagaatgtagaactggccgtaatga cagacaaacaaccactcagaatgcttgaattgaagaaagtagaggaatacatagaacaaattgaaaaagaaaaagaagaa gaggcggagaagaaaaaacagaaaaaatag |
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Protein
| Protein ID | pfu_aug1.0_3652.1_44719.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3652.1_44719.t1 MSDRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKNIVVLGVEKKAVAKLQEDRTVRKIALLDDHVALAFAGLTA DARILINRARVECQSHKLTVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGLSSLIIGFDYDGTPHLYQTDPSGTYHEWKA NAIGRSAKPVREFLEKNYTEEVAVNDDECIKLALKALLEVVQSGAKNVELAVMTDKQPLRMLELKKVEEYIEQIEKEKEE EAEKKKQKK |
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