Gene
| Gene Model ID | pfu_aug1.0_3665.1_08688 |
|---|---|
| Locus | scaffold3665.1 : 1 ... 21198 : + |
| To GenomeBrowser | scaffold3665.1:1..21198 |
| Genes list of scaffold | scaffold3665.1 |
| Synonym | pfu_aug2.0_819.1_31183 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3665.1_08688.t1 | 3 | 1 | VWA | 53 | 210 | 0.0 | 167.3 | 9.1e-36 | 3.4e-32 | 111.6 |
| pfu_aug1.0_3665.1_08688.t1 | 2 | 1 | VWA_2 | 60 | 202 | 2.7e-14 | 53.6 | 2.1e-13 | 7.7e-10 | 39.1 |
| pfu_aug1.0_3665.1_08688.t1 | 2 | 2 | VWA_2 | 249 | 305 | 2.7e-14 | 53.6 | 1.6e-05 | 0.061 | 13.4 |
| pfu_aug1.0_3665.1_08688.t1 | 3 | 2 | VWA | 250 | 313 | 0.0 | 167.3 | 1.6e-18 | 6.1e-15 | 55.3 |
| pfu_aug1.0_3665.1_08688.t1 | 3 | 3 | VWA | 325 | 344 | 0.0 | 167.3 | 0.012 | 44.0 | 3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3665.1_08688.t1 | gi|260800507|ref|XP_002595171.1| | hypothetical protein BRAFLDRAFT_240983 [Branchiostoma floridae] | 4.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3665.1_08688.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3665.1_08688.t1 aaggataatgttatacgtcgcggttcttctgtgtttcgccgtcgcctcaagggcggcgactttttcgaagagagcaacgg gagaagtatctctcaggaccttcagtcctttgattatcttgtgcaacaagccttctatgattcgtctctaaaagtaagtg tcggaaaagataactttcagaaacaattgcaattcgtacaaaatactgtcaatgatttaacaatagcctccgataaagca aagataagtgttgtgacgtttggcaatggtgtctacaatcagttcttttttaaccaatatagttcgaaggcagatattgt aaatgcaatatcttctacaccgtactatggaggaaggacgcatacatctgacgcaatccgttacgtcagtcaaacttcat tcaatcccatccatggagcgagaaataacgccgctcacgtgacagtactcgtcacgaacggccattcaaccacaacagac atcacaaaactcaaagcgcaaacagcaaaggataataatataataatgtacggcgtaggagtcggaagcgcagtggatat gaatgaattatccggaatagcaagtgatccaaaaggaagatacgttcttcatgcggaaagttatggatcgttgagttctc tatctggagtgttatccgcaaaactatgtaacggtaagttttcaactcatgacaactgtaatttccttgttgggatagat agtacttgctgtttgactaaggctgattttgcatttgtggtggactcttcttcaagtatcgactctggtactttccataa actggaaaacgtactgaaaacagccgtcacaaagatggacataggtccggacaaagtccatgtcggactcatgcagtaca gcagctatccttctatccaattcccactgactcaatatactcgtgtggagctcgtaaaaaaagttcccctcgaggggttt gacagaatgatctcagttggaattggtaaccgtgtgaacaacgccgagctgaacagcatcgcagacgacaacagcaaggt agtgctcgcgggatccatcagtgaccctgatgccattgttgataagattttacagaaagcttgccaggatggcaagtgtt cattcaaaggacgaatgtacaagacaggagagcattggatggatggctgtgattatgaatgtgtatgtgaggatggtagc aatggacattacaaatgcacaaacagatgtcctttgtaccatgatttgcccagtgagtgtacacttgtgagacaacaagg acaatgctgtctacaacctgtctgtaatttccgtcaaagtatttcaaaaactgaaggtagtggaaaaggcacaacttcaa ctggaataactgaattaggattaactcagcatttttgtaagaaatgtttcttcaaatttaacctgagttcagtgtatgca aatcacatcacaccatcggacctgtccgacaaaattataaccggtctgattcacttccttaactgtttgttacacagcat aactatcgaaaatgcgtcagagtcatcaaacgccttttataccncattcttacgacttgcactctga |
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Protein
| Protein ID | pfu_aug1.0_3665.1_08688.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3665.1_08688.t1 KDNVIRRGSSVFRRRLKGGDFFEESNGRSISQDLQSFDYLVQQAFYDSSLKVSVGKDNFQKQLQFVQNTVNDLTIASDKA KISVVTFGNGVYNQFFFNQYSSKADIVNAISSTPYYGGRTHTSDAIRYVSQTSFNPIHGARNNAAHVTVLVTNGHSTTTD ITKLKAQTAKDNNIIMYGVGVGSAVDMNELSGIASDPKGRYVLHAESYGSLSSLSGVLSAKLCNGKFSTHDNCNFLVGID STCCLTKADFAFVVDSSSSIDSGTFHKLENVLKTAVTKMDIGPDKVHVGLMQYSSYPSIQFPLTQYTRVELVKKVPLEGF DRMISVGIGNRVNNAELNSIADDNSKVVLAGSISDPDAIVDKILQKACQDGKCSFKGRMYKTGEHWMDGCDYECVCEDGS NGHYKCTNRCPLYHDLPSECTLVRQQGQCCLQPVCNFRQSISKTEGSGKGTTSTGITELGLTQHFCKKCFFKFNLSSVYA NHITPSDLSDKIITGLIHFLNCLLHSITIENASESSNAFYTXFLRLAL |
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