Gene
| Gene Model ID | pfu_aug1.0_36864.1_62885 |
|---|---|
| Locus | scaffold36864.1 : 11744 ... 21215 : - |
| To GenomeBrowser | scaffold36864.1:11744..21215 |
| Genes list of scaffold | scaffold36864.1 |
| Synonym | pfu_aug2.0_7640.1_02923 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | G protein-coupled receptor 54 |
| Description | BLASTP top hit to XP_787561.2 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_36864.1_62885.t1 | 1 | 1 | 7TM_GPCR_Srv | 12 | 226 | 4.7e-06 | 25.9 | 1.5e-09 | 5.6e-06 | 25.7 |
| pfu_aug1.0_36864.1_62885.t1 | 1 | 1 | 7tm_1 | 16 | 209 | 2.1e-31 | 108.9 | 7.0e-35 | 2.6e-31 | 108.6 |
| pfu_aug1.0_36864.1_62885.t1 | 1 | 1 | 7TM_GPCR_Srsx | 22 | 222 | 4.7e-07 | 29.2 | 1.7e-10 | 6.3e-07 | 28.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_36864.1_62885.t1 | gi|125742354|gb|ABG82165.1| | G protein-coupled receptor 54 [Rachycentron canadum] | 5.0e-21 |
Transcript
| Transcript ID | pfu_aug1.0_36864.1_62885.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_36864.1_62885.t1 atgaccttgaaagtatttcaaggtcacccaatgaattttcaaggtaagctactacgctacataatgatcgtctgtctagc ggtaaatgtcatgacgcttgtggcgattggagttgaccgcctcttggttgttgtgtttccgctgttctcaaaaccataca ggaagaaaaagtatgcctacatttgtgtgattggtctctgggtgatctccttcatcatattcactcctttcctcaacatt accaaggaaataagagtaggcagaccgtactgtatagaacaactggacgaacacagcaggttcgtgtacgccattctaat gtttgtggtgttctacgctataccacaaatattccttggaacgtgctataccatcatctccctcaagctctggaacagca agtactcaagcgaaatgaatcaagtagccattgtcaccttgaaaatcaagggtaaaatcgtgaaactgaccttcgccatt atccttgcctttgcggtttgctggttgcccatgcatatcggggctctacttaacgccaagtcaggcggatcggagttcaa ctactatctacagctctttgcgccatgttttgcctacacaacggtatccttgaatccgattatatattgctttatgtcca agtcactgagaaaaagcttaaaatcagcaatccactgtgatgaccataccataaagcagaggaaggccaagccgctttta cttcaaatgcagatgtga |
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Protein
| Protein ID | pfu_aug1.0_36864.1_62885.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_36864.1_62885.t1 MTLKVFQGHPMNFQGKLLRYIMIVCLAVNVMTLVAIGVDRLLVVVFPLFSKPYRKKKYAYICVIGLWVISFIIFTPFLNI TKEIRVGRPYCIEQLDEHSRFVYAILMFVVFYAIPQIFLGTCYTIISLKLWNSKYSSEMNQVAIVTLKIKGKIVKLTFAI ILAFAVCWLPMHIGALLNAKSGGSEFNYYLQLFAPCFAYTTVSLNPIIYCFMSKSLRKSLKSAIHCDDHTIKQRKAKPLL LQMQM |
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