Gene
| Gene Model ID | pfu_aug1.0_37.1_36246 |
|---|---|
| Locus | scaffold37.1 : 60921 ... 70515 : - |
| To GenomeBrowser | scaffold37.1:60921..70515 |
| Genes list of scaffold | scaffold37.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-E12/E47 |
| Description | Best hit to AAA60310 SEF2-1A protein, partial [Homo sapiens] with 6e-43 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_37.1_36246.t1 | 2 | 1 | HLH | 82 | 92 | 1.1e-13 | 50.6 | 0.02 | 97.0 | 2.7 |
| pfu_aug1.0_37.1_36246.t1 | 2 | 2 | HLH | 90 | 142 | 1.1e-13 | 50.6 | 5.9e-17 | 2.9e-13 | 49.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_37.1_36246.t1 | gi|327277906|ref|XP_003223704.1| | 1.0e-34 |
Transcript
| Transcript ID | pfu_aug1.0_37.1_36246.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_37.1_36246.t1 atgaagggaagtcatcatggattatcagagggtcgatctagctctgaacaaaaacctacagaggaaaaagaaagtagcgt aaaggatgagaagggagacaaagctgatgctgaatcaatgaaaagtgaaggtagcagttgtgagggagggaagagtgtta catcccctggtgccagtactggaggacctccatccaaaaggtcacggcgcactgaaacaaatgacgaggatgaatctcca gagaccaaagctgagagggaacgaatgaggagacaggctaataacgctagagagagagttcgtgttcgagatataaatga agcttttaaggagctaggtcagatggtggcccttcagtcagggagttcccaacctctgacaaagctcatgattctccagc atgctgtcggcattattacaaacttggaacagcaggttcgagaacggaatttaaaccctaaggcagcatgtttaaagagg cgagaagaggagaagacagaagaattgccaggtagaggtggtctatctgcagatgatctcgtctcacagccacctggcct tacaggtaagtgtggaagaagaaaatctgatatttcattatcatga |
|
Protein
| Protein ID | pfu_aug1.0_37.1_36246.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_37.1_36246.t1 MKGSHHGLSEGRSSSEQKPTEEKESSVKDEKGDKADAESMKSEGSSCEGGKSVTSPGASTGGPPSKRSRRTETNDEDESP ETKAERERMRRQANNARERVRVRDINEAFKELGQMVALQSGSSQPLTKLMILQHAVGIITNLEQQVRERNLNPKAACLKR REEEKTEELPGRGGLSADDLVSQPPGLTGKCGRRKSDISLS |
|