Gene
| Gene Model ID | pfu_aug1.0_370.1_29216 |
|---|---|
| Locus | scaffold370.1 : 34113 ... 37895 : - |
| To GenomeBrowser | scaffold370.1:34113..37895 |
| Genes list of scaffold | scaffold370.1 |
| Synonym | pfu_aug2.0_1021.1_04767 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | foxA |
| Description | The best hit to AJ507424.1 Patella vulgata mRNA for fork head protein (fkh gene) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_370.1_29216.t1 | 2 | 1 | Fork_head_N | 27 | 148 | 5.1e-11 | 43.1 | 1.4e-14 | 5.1e-11 | 43.1 |
| pfu_aug1.0_370.1_29216.t1 | 1 | 1 | Fork_head | 149 | 244 | 0.0 | 154.7 | 0.0 | 1.4013e-45 | 153.6 |
| pfu_aug1.0_370.1_29216.t1 | 1 | 1 | HNF_C | 359 | 414 | 2.4e-09 | 38.1 | 6.4e-13 | 2.4e-09 | 38.1 |
| pfu_aug1.0_370.1_29216.t1 | 2 | 2 | Fork_head_N | 369 | 400 | 5.1e-11 | 43.1 | 0.19 | 710.0 | 0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_370.1_29216.t1 | gi|22859616|emb|CAD45552.1| | fork head protein [Patella vulgata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_370.1_29216.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_370.1_29216.t1 atgtacgagaagcagtctctcggaccagagtgtccccagacgggtgactatctaactatgctaactgctaagggaccata cgatccatcgtgtaccagcagctatcctatcacctctataccgagtatgaactctatgggaggcctgggatctatgacca acagctactctccccctcagatggggggtatggggacgatgacccctcccggcatgacaaacctcggcatggggtcgaca atggggatgcatccgagcaccatgcacgctggaatgaactccatgaacgctatgtcacagatgaacgggatggcgggaat ggggagtatgtctatgaacgggatgagtggggcaatgtcccccatgaggatggatagttataacagggcacaggcaatca acagggcccgggacaagtcttaccgtcggagctacacccatgccaaacctccttactcgtacatatcgctcattactatg gcaatccaacagtcgccgaacaaaatgtgcacgctcagtgaaatttaccagtttattatggacttgtttcctttctatcg ccaaaatcagcagaggtggcagaactctatcagacatagtctttcatttaatgactgttttgtgaaagttcctagaactc cggaccgtccaggaaagggaagttattggacgctacacccagactctggaaatatgttcgaaaacggatgctacctcaga cgacagaagcgattcaaatgcttgaagaaggaattaattcgtcaaactcaacgtggggacggatccaccgaggacgagca tctagatgacccccattctccacagagtggtcagagctgtactcccccaccctcacatactcccacggaacctccacaac ccacggtggaaccaccggacaccaaacctgtcatcaataactccagctctcatggaaccacccacgggacaccacatcag aacaccacccctccgtcacaacatcatgaaatgctaccacaaatgaggcatttaccgcagcaggatcatttatctcaggg gtacaatccggcgggttaccaccctcactcgtttaaccaccccttttccataaacagtttaatcacggacaataaaatgg gtgaaatgaaaatgtatgaaatgcaggcagcttatggcgcatacaaccccatggcgttacccgcgatgccaaaaccggag gcaaccgtaccgatgtcggtttcagacaatagttattataaaacttacgcaccgcattcaacggcaagtttatga |
|
Protein
| Protein ID | pfu_aug1.0_370.1_29216.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_370.1_29216.t1 MYEKQSLGPECPQTGDYLTMLTAKGPYDPSCTSSYPITSIPSMNSMGGLGSMTNSYSPPQMGGMGTMTPPGMTNLGMGST MGMHPSTMHAGMNSMNAMSQMNGMAGMGSMSMNGMSGAMSPMRMDSYNRAQAINRARDKSYRRSYTHAKPPYSYISLITM AIQQSPNKMCTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDRPGKGSYWTLHPDSGNMFENGCYLR RQKRFKCLKKELIRQTQRGDGSTEDEHLDDPHSPQSGQSCTPPPSHTPTEPPQPTVEPPDTKPVINNSSSHGTTHGTPHQ NTTPPSQHHEMLPQMRHLPQQDHLSQGYNPAGYHPHSFNHPFSINSLITDNKMGEMKMYEMQAAYGAYNPMALPAMPKPE ATVPMSVSDNSYYKTYAPHSTASL |
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