Gene
| Gene Model ID | pfu_aug1.0_374.1_29221 |
|---|---|
| Locus | scaffold374.1 : 62166 ... 77635 : - |
| To GenomeBrowser | scaffold374.1:62166..77635 |
| Genes list of scaffold | scaffold374.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_374.1_29221.t1 | 2 | 1 | Claudin_2 | 23 | 42 | 5.0e-07 | 29.5 | 0.086 | 420.0 | 0.5 |
| pfu_aug1.0_374.1_29221.t1 | 1 | 1 | L_HGMIC_fpl | 25 | 137 | 2.0e-25 | 89.8 | 5.2e-29 | 2.6e-25 | 89.4 |
| pfu_aug1.0_374.1_29221.t1 | 2 | 2 | Claudin_2 | 38 | 137 | 5.0e-07 | 29.5 | 1.4e-10 | 6.7e-07 | 29.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_374.1_29221.t1 | gi|260804783|ref|XP_002597267.1| | hypothetical protein BRAFLDRAFT_260889 [Branchiostoma floridae] | 1.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_374.1_29221.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_374.1_29221.t1 atggaacagaaatttaacccagagacagctagaatttaccattttcggtacatgagggaatatcgggctatctgtgtgct gtggggtttactgtccatcatttggtgtatcctcaacttagtaacattcgtccagcctcagtgggtcggagattctccag aaagcccgggctttgggcatttgggcgttttccagtactgttaccctgacaatgcccagggacggtatgtgtgttcagga tctttcacggattttgacacgatcttgaatgattccttcaaagcgacaacgttcttcgtcggagtatcatgtctcctcat gttgatcaccgtagcggctttgctgttgtttttctgcttcaagaaaacctttgtcttttatttttgcggtattatggaac tcatatcagctgaactgaatggtttttctgcagagagcatgtctaagcgatccatccccatcaaccccgtggtgactgta ccagcggacagcgcccgatcagcttctaacttccagctttaa |
|
Protein
| Protein ID | pfu_aug1.0_374.1_29221.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_374.1_29221.t1 MEQKFNPETARIYHFRYMREYRAICVLWGLLSIIWCILNLVTFVQPQWVGDSPESPGFGHLGVFQYCYPDNAQGRYVCSG SFTDFDTILNDSFKATTFFVGVSCLLMLITVAALLLFFCFKKTFVFYFCGIMELISAELNGFSAESMSKRSIPINPVVTV PADSARSASNFQL |
|