Gene
| Gene Model ID | pfu_aug1.0_3766.1_66784 |
|---|---|
| Locus | scaffold3766.1 : 41066 ... 45979 : + |
| To GenomeBrowser | scaffold3766.1:41066..45979 |
| Genes list of scaffold | scaffold3766.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3766.1_66784.t1 | 1 | 1 | adh_short | 21 | 177 | 1.5e-19 | 70.4 | 5.2e-23 | 1.9e-19 | 70.1 |
| pfu_aug1.0_3766.1_66784.t1 | 1 | 1 | KR | 24 | 144 | 3.8e-08 | 33.1 | 1.3e-11 | 4.7e-08 | 32.9 |
| pfu_aug1.0_3766.1_66784.t1 | 1 | 1 | adh_short_C2 | 30 | 177 | 3.3e-10 | 40.1 | 1.1e-13 | 4.1e-10 | 39.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3766.1_66784.t1 | gi|47086965|ref|NP_998486.1| | peroxisomal 2,4-dienoyl-CoA reductase [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3766.1_66784.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3766.1_66784.t1 atggcagagaaatgcattgacaactacaagtacatctttaacccaaagttgctgagtggtaaagtggcctttgtaactgg tggaggaactggaatttgttttactgtcacagaaatcttgatgagacatggatgtgatgccgtcatagtcagtaggaaat tagacaaactgaaggagtctgcagagacactatcaagggtcactggtaggaaatgtatcccagtacaaatggatgtcaga aaaccagagtctgttataaatgctgtagaggaagccttgaaaaatttcagacgaattgacattctggtgaatggtgctgc tggtaatttcctgtgtccagcatccagtatgtcattcaatgcgttcaggacagtgatggagatagatgcacacggcacgt tcaacgtcagtaaggtcgtatatgacaagtacatgaaggaccatggtggcgtcatagtcaacataacggcactccttcat gtaagaggacgtattctacaggcacatgctggctctgctaaagctgctatagggattatcaaccattatgaggtacaaca cctggtgaaagccaagatcatttcaaggtcaaggtcatatgtctag |
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Protein
| Protein ID | pfu_aug1.0_3766.1_66784.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3766.1_66784.t1 MAEKCIDNYKYIFNPKLLSGKVAFVTGGGTGICFTVTEILMRHGCDAVIVSRKLDKLKESAETLSRVTGRKCIPVQMDVR KPESVINAVEEALKNFRRIDILVNGAAGNFLCPASSMSFNAFRTVMEIDAHGTFNVSKVVYDKYMKDHGGVIVNITALLH VRGRILQAHAGSAKAAIGIINHYEVQHLVKAKIISRSRSYV |
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