Gene
| Gene Model ID | pfu_aug1.0_377.1_07504 |
|---|---|
| Locus | scaffold377.1 : 100376 ... 104856 : + |
| To GenomeBrowser | scaffold377.1:100376..104856 |
| Genes list of scaffold | scaffold377.1 |
| Synonym | pfu_aug2.0_516.1_20858 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_377.1_07504.t1 | 1 | 1 | HMG_box_2 | 33 | 102 | 2.0e-09 | 37.7 | 5.4e-13 | 4.0e-09 | 36.7 |
| pfu_aug1.0_377.1_07504.t1 | 2 | 1 | HMG_box | 35 | 103 | 2.4e-25 | 88.5 | 2.2e-28 | 1.6e-24 | 85.9 |
| pfu_aug1.0_377.1_07504.t1 | 2 | 2 | HMG_box | 303 | 317 | 2.4e-25 | 88.5 | 0.54 | 4000.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_377.1_07504.t1 | gi|229001910|emb|CAY12635.1| | SRY-related HMG box C protein [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_377.1_07504.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_377.1_07504.t1 atggtaccacaaaattgtattccatttggatctcaatccattgataagaacacttctactccttacacggacgctactca gtgcaagaaacagtcaaatcatgtgaaacgacctatgaacgcatttatggtttggtcgcagatcgaacgaaggaaaatat cggaagtatctcccgatatgcacaacgcagagatcagcaaacgccttggtaaacgatggaagactctaaacgagttagac agacaaccgtacattgaggaggctgagaggttaaggttgctgcacatgcaggagtacccagactacaagtacagaccgag gaagaaggctaagcctgtagtgaaatcagactgtggaaaagttaccaaaccttcacataaaagccgtacggaccgacaca aacacaaatccgccgaagtgaaaagcttcctggaggaggctgcattagaggtcagtgataacagcagacttaaactcaaa cttacaattgacaaaaagttcaaagacagtattaaagccagtcgacatgtgcctgtgtcttcttgtcaactaaccccacc cgctaaagtgccgtccagcccctccgtatactcccctccgactcccgaatctaccagtttctaccccgaggagatctatg acactcctgccgcctctcccgttgaggaaacctgcattaaacgagagcctcaaactcagggtaataatcagggagacgga tcatcactggcggatttggataatcttaccgatgtgttacaaataccagcgtggcaattcgataacttggacttgagtaa actaggtgccgatttgtatgactttcccaattttgacatgcataataataatgtcacaaaacccgtgtccagtgcatcct ccacctcaagtaacggatcacattttgaattccccgattactccactccagaagtctcggaaatggttggtctggaatcc gagtggttggacatttccgtgcttggctcaatagctgctcattga |
|
Protein
| Protein ID | pfu_aug1.0_377.1_07504.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_377.1_07504.t1 MVPQNCIPFGSQSIDKNTSTPYTDATQCKKQSNHVKRPMNAFMVWSQIERRKISEVSPDMHNAEISKRLGKRWKTLNELD RQPYIEEAERLRLLHMQEYPDYKYRPRKKAKPVVKSDCGKVTKPSHKSRTDRHKHKSAEVKSFLEEAALEVSDNSRLKLK LTIDKKFKDSIKASRHVPVSSCQLTPPAKVPSSPSVYSPPTPESTSFYPEEIYDTPAASPVEETCIKREPQTQGNNQGDG SSLADLDNLTDVLQIPAWQFDNLDLSKLGADLYDFPNFDMHNNNVTKPVSSASSTSSNGSHFEFPDYSTPEVSEMVGLES EWLDISVLGSIAAH |
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