Gene
| Gene Model ID | pfu_aug1.0_37764.1_62928 |
|---|---|
| Locus | scaffold37764.1 : 8643 ... 14599 : - |
| To GenomeBrowser | scaffold37764.1:8643..14599 |
| Genes list of scaffold | scaffold37764.1 |
| Synonym | pfu_aug2.0_1701.1_05191 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_37764.1_62928.t1 | 1 | 1 | Retrotrans_gag | 149 | 235 | 4.1e-06 | 26.7 | 1.1e-08 | 1.7e-05 | 24.7 |
| pfu_aug1.0_37764.1_62928.t1 | 1 | 1 | RVP | 492 | 590 | 2.3e-08 | 33.8 | 4.0e-11 | 6.6e-08 | 32.3 |
| pfu_aug1.0_37764.1_62928.t1 | 1 | 1 | Asp_protease_2 | 496 | 581 | 3.8e-06 | 27.3 | 5.5e-09 | 9.0e-06 | 26.1 |
| pfu_aug1.0_37764.1_62928.t1 | 1 | 1 | RVT_1 | 822 | 980 | 5.1e-25 | 88.0 | 6.3e-28 | 1.0e-24 | 87.0 |
| pfu_aug1.0_37764.1_62928.t1 | 1 | 1 | rve | 1381 | 1494 | 3.1e-23 | 82.1 | 4.5e-26 | 7.4e-23 | 80.9 |
Transcript
| Transcript ID | pfu_aug1.0_37764.1_62928.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_37764.1_62928.t1 atgactactaatgagttaagcatggagcatgctgttgatcaattaacttctcagatgtcggacttagggaatgattctca gtcttttcattcgccccctggttcctctaatgatggtgacccaagtcctgacccccatccccaggatccctctaattctg gtattgatcccaatctcatggacgttcgaagggcccacaggaccccgcccgacgaagatgaaactattaagtggatagct ggtcaggtcaaaggtctacaaacggctatttcggttccccttctccaggtggtaaaaactttcgaaggcgacccctctaa atttaaacaatgggcgaaagatatagaaaggtacgcgcaaatggcaagacttgaaaattctgatattccgcgcatcgtac tcatgacgtgcacgggctcagtggcggattttgtgaaacgctatatagatgaggtggagtcaaataatgaacttccagat tggcttcgtcttaagaaattaatgcaaaaacgttttgctgaaatcacggaccaacagcaagctatggctgtactccgtag aatcaaacaaaaacccgaggaaagtgtccaattgtactctgaacgtttgctccgcttagcggaagacgcctacccaaccc ctttcgacgatagggttgatcagttggttcaaaaacagttggttgatattttttgtgacgggttgtgttacgattattta agaatgaaagttttgagggaagatcctgacaaatatgaaaaagcagtcgaaattgcaatgagagaacaaagtttacgtaa acgtttttatttgagatcagatacagagtacgcttcgctactagctggcacaaacccaaatttggctgggaatcaaaatt cacacgcagagttcattcagagaaaccgcagtgtaggtcatagtgaaaattttactacgcctatcaataacaatcagatt tacggcacgcgcgccccacctgcaaatgctcaaagcgcgttaaacacacagggtctagatttacggtttatagagccaat ggatatagatttctcgcgaaatgctagatgttttaaatgtacaggacaaggacaccgcgctcgtgattgtcctacttcaa atcgcgtaaacaaaaactggatcagagcacttgatagttctgacgatgaatcagatgatgaaagagtccctactcagaaa gtaaagaaatctgtaaagaaaatagagagccccccacctcagtcccatattaaacacaaaccccaaattaacagagctcc tggacggaatcctacccctagacaaggtcaaaatcgccaacaaaccccagattgggcaaagtcgggaaaactaaatcgct ctcttcaaaaggaagccgttgaagagagaggttgtaaaagagtaaaagaacctagaaatataaatgaaagtaagaaaccc gtttccgatttgaatttggctggaaaccctagctcctgtattattaagatcggcaaattgagatgccgtactttggttga taccggcgctgaggtttccattatgagtaaaaagatttttgatcgattatccccgaaaccgaaattaacgcgagtgataa aaagtttacgagctgtaaatagcgagccgattaacgtattaggacggacaacgcttaggttcaggatgaacggactgact atgtctcaggatttttatgtcgtagaaactttgaacaaaaactttatcctaggaagagattggctcaaagagaatggtgt acgcctttattttgacttaggaatgctaagagtaggacagacgtatgtgaaacttgaggaggacactcatatatgctcca ttctgagactcagcaagcgcacaacgattaaaccgcagacagccgttatatgtcacgtaaaattacaaaaaggcttccgc ttatcgaactcgagactaatagaaatatcccaacttgaacccggatgtatctcaaacgaaccaggaatcacgctcaagga gtcagtaaacacggtaaaatcgccttacaggatcccagtccttattatcaatgagacaaacaagagttatcgcctacgga gaggaggtgttattggaaaagcacgatctttgaactcacaagatattttagcaattgacgaagatgaacctatggaaatt gatgacccaaagcctgaggcgtcggacattgaagacttgtatgtacccgacggaaggcgaggagaggtaacaagactact tagaaacaacagagacctcattgctaagagtgactcggatcttggaggaacgcggactgtacaaatgaaaataaacaccg gaaaccacccacccatcaaaaacagaccttataggactcccttgaacaagagaaagatcatcgatcaagcgatagacgaa atgttagaggcaagggtaattcaaagatcccagtccccttggtcatttcctttggtggtagcaaagaaaaaggatggaag tgaccggatgtgcgtcgacttcagaacactcaataaagttgtgaaaccaatctcattccccctccctttgatcgatgaca tcctatctctgataggaaatgccaagtacttcaccaccttagacttgagacacggatattggcaagttactttggacgaa agcagcaaggaaaagacagctttcgcctgtcatcgagggcttttcgagtttaacaggatgcctttcggccttagtaatgc ccccgctgtctttcaggaactgatgaataccgtcttacaagggtgtgaaggattcgccatggcatacttggatgacatcc tgatattttgtcaagacgaccctaaacaacatatccggcacatacaagaggtattcaatcgactcaggcagcacaatctc aagctcaaactgaagaagtgtgctttctttaaggaggaaaccgaataccttggtttcttgataaacaaggatggtatcgc cccagaccctaaaaaggtcgaggctgtcaaaaatctaccaacacctaaaagtgtcagagaagtacgcggctttattggaa tgtgcagctattacagaagatttgtcccaaacttctcaaagatagcggaacctcttctcaatttgacgaagaaatatgca cgattcaagtggacggacgaatgtcagcgcgccttcgattttctcaaggacagtcttacggtagtaccactcctcaccta cccggatacaaacaaaccgtacgtcttatacactgatgcgagtgacagttgtgtgggcgcgtgccttactcaggaaactg ataagggtgaagaaaaaccaatctacttcttatcacacaagctcagccacacacagaagaaatggtctacaatcgaaaaa gaagcctttgctattcattatgcccttcagaagttggaccactacctacatggagcgaaatttaccatcaaaacggatca caaacccctgaaatacctcctggactcgcctatgcaaaacaagaaaatacaactctgggctttaagcattgctggataca attgtaagatcgagtatgtcaaaggtgaagacaatcactgtgcggatcttttgtctaggataccacaccccatgacaaac aaagaacacgagaaatctgaatacgagccggatatagatgacagagcatttgagataggagctattaactccaacgaatt caaccctagagactttgctagttgccacgtggaaggtcatggcgaaatttccaaagcaatttcagaccttcctgaagagt tcaatatgaaggaggaacagaataaagatccagaggtactaaaactcaaggacaggttaacgaaaggagcagcgactaaa gctgagcagacacattatttcgaagatgaaaaaggactccttcactacctatctcaacctgaatccgaggaccctaagct acggctgtatatacctcatgaaatggagacagtcgtcctcaaacaatatcacgatcaacttggtcacatggctttagata aaacctacgactcaatgcgtcagaagtacttctttcccaacatgtacaagaaaattcatggttacattgagaagtgtgtc acgtgtcagacgaggagttcaaagaaaacaaaaccacccctcagggagaccgaagtaccaccatatcccttcgccaaaat cggtcttgacttatctggtccttatccgacgacattatccggaaacaagtatatcgtctcttttatagatgtatattccg gatggccagaagcctaccctgttccggacaagtcagctgaccggatcgtacatcttatcctggaggaaattttccctaga tttggttgccccctcgagattatttccgacaatggaactgaaaatgtcaacagaaaagtgcaggaaactttagacgccat gaatatatatcatatcaagacatcattctacagtccccaagctaacgggaaggtcgagagattccatcgtaccctgcatg acgtcatgtctaagaaaattcaggaagatgtgcagacatgggacctgtacctgaatcaaacactggctgctatcagattc cacgttaatgagtcatcgaaattctcgccttatttccttctttacaaccgggatgtcgtcctcccactggacaccatatt gaaaccaagaaaaaggtacatgggcgaagatcagcaccaaatagccctccaacaacaacataaatcattcctcttggttc acagaaacatgaaagaggccaaaaggagacagaaaaagtacgctgacaaaaacagtaaagaggaaaattttcagatcggg gacccagtctatgtaaaaaatcatcgaagggaaaacaaactggatattaagtggcaaccctacttcaggataatcgatca aacaggaccattgtcgtttatcgtgaaaaatcagctggacggaacaacaacaaagtcacatgctcgacatctaagacaag caaagatcgatgaatggaaaatcccgagggatactgctggaaacctattaaggaaaacaacatacgtagtcccccctgat tattctgacagtgatgaggaagtacaaactccccaagatatggtcgtaaaacatcgacaacaagagagagaaggatcgtc tgatgaagatgacattccacttatggaacttcgtagacgtcttcgttgtcgtgaaatgcctgagacacctgacaatgaca ctagacttgacgttccggtgaatcaacctgtaaataccgaacaaaatcgcgccgaagaaaacatggaaattgacgcgatc tctaagaaaccagagacgggattcttacttgaaaacaaggcttcctcccctaaaaccgcccaaggtcctgacccccaact cctaataagaaatatatgtcatgctgttcattatatgacatctaataacctcctactttcagatggacaaacatcagcct aa |
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Protein
| Protein ID | pfu_aug1.0_37764.1_62928.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_37764.1_62928.t1 MTTNELSMEHAVDQLTSQMSDLGNDSQSFHSPPGSSNDGDPSPDPHPQDPSNSGIDPNLMDVRRAHRTPPDEDETIKWIA GQVKGLQTAISVPLLQVVKTFEGDPSKFKQWAKDIERYAQMARLENSDIPRIVLMTCTGSVADFVKRYIDEVESNNELPD WLRLKKLMQKRFAEITDQQQAMAVLRRIKQKPEESVQLYSERLLRLAEDAYPTPFDDRVDQLVQKQLVDIFCDGLCYDYL RMKVLREDPDKYEKAVEIAMREQSLRKRFYLRSDTEYASLLAGTNPNLAGNQNSHAEFIQRNRSVGHSENFTTPINNNQI YGTRAPPANAQSALNTQGLDLRFIEPMDIDFSRNARCFKCTGQGHRARDCPTSNRVNKNWIRALDSSDDESDDERVPTQK VKKSVKKIESPPPQSHIKHKPQINRAPGRNPTPRQGQNRQQTPDWAKSGKLNRSLQKEAVEERGCKRVKEPRNINESKKP VSDLNLAGNPSSCIIKIGKLRCRTLVDTGAEVSIMSKKIFDRLSPKPKLTRVIKSLRAVNSEPINVLGRTTLRFRMNGLT MSQDFYVVETLNKNFILGRDWLKENGVRLYFDLGMLRVGQTYVKLEEDTHICSILRLSKRTTIKPQTAVICHVKLQKGFR LSNSRLIEISQLEPGCISNEPGITLKESVNTVKSPYRIPVLIINETNKSYRLRRGGVIGKARSLNSQDILAIDEDEPMEI DDPKPEASDIEDLYVPDGRRGEVTRLLRNNRDLIAKSDSDLGGTRTVQMKINTGNHPPIKNRPYRTPLNKRKIIDQAIDE MLEARVIQRSQSPWSFPLVVAKKKDGSDRMCVDFRTLNKVVKPISFPLPLIDDILSLIGNAKYFTTLDLRHGYWQVTLDE SSKEKTAFACHRGLFEFNRMPFGLSNAPAVFQELMNTVLQGCEGFAMAYLDDILIFCQDDPKQHIRHIQEVFNRLRQHNL KLKLKKCAFFKEETEYLGFLINKDGIAPDPKKVEAVKNLPTPKSVREVRGFIGMCSYYRRFVPNFSKIAEPLLNLTKKYA RFKWTDECQRAFDFLKDSLTVVPLLTYPDTNKPYVLYTDASDSCVGACLTQETDKGEEKPIYFLSHKLSHTQKKWSTIEK EAFAIHYALQKLDHYLHGAKFTIKTDHKPLKYLLDSPMQNKKIQLWALSIAGYNCKIEYVKGEDNHCADLLSRIPHPMTN KEHEKSEYEPDIDDRAFEIGAINSNEFNPRDFASCHVEGHGEISKAISDLPEEFNMKEEQNKDPEVLKLKDRLTKGAATK AEQTHYFEDEKGLLHYLSQPESEDPKLRLYIPHEMETVVLKQYHDQLGHMALDKTYDSMRQKYFFPNMYKKIHGYIEKCV TCQTRSSKKTKPPLRETEVPPYPFAKIGLDLSGPYPTTLSGNKYIVSFIDVYSGWPEAYPVPDKSADRIVHLILEEIFPR FGCPLEIISDNGTENVNRKVQETLDAMNIYHIKTSFYSPQANGKVERFHRTLHDVMSKKIQEDVQTWDLYLNQTLAAIRF HVNESSKFSPYFLLYNRDVVLPLDTILKPRKRYMGEDQHQIALQQQHKSFLLVHRNMKEAKRRQKKYADKNSKEENFQIG DPVYVKNHRRENKLDIKWQPYFRIIDQTGPLSFIVKNQLDGTTTKSHARHLRQAKIDEWKIPRDTAGNLLRKTTYVVPPD YSDSDEEVQTPQDMVVKHRQQEREGSSDEDDIPLMELRRRLRCREMPETPDNDTRLDVPVNQPVNTEQNRAEENMEIDAI SKKPETGFLLENKASSPKTAQGPDPQLLIRNICHAVHYMTSNNLLLSDGQTSA |
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