Gene
| Gene Model ID | pfu_aug1.0_3794.1_08730 |
|---|---|
| Locus | scaffold3794.1 : 31644 ... 59025 : - |
| To GenomeBrowser | scaffold3794.1:31644..59025 |
| Genes list of scaffold | scaffold3794.1 |
| Synonym | pfu_aug2.0_51.1_03519 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3794.1_08730.t1 | 2 | 1 | Spectrin | 119 | 224 | 5.4e-33 | 113.4 | 4.1e-25 | 1.5e-21 | 76.6 |
| pfu_aug1.0_3794.1_08730.t1 | 2 | 2 | Spectrin | 236 | 303 | 5.4e-33 | 113.4 | 6.6e-14 | 2.5e-10 | 40.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3794.1_08730.t1 | gi|23394914|gb|AAN31639.1|AF484962_1 | alpha-actinin [Biomphalaria glabrata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3794.1_08730.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3794.1_08730.t1 atggagcaatacagtgatggatatatggaagaagaggaagaatgggatagagaaggtcttctggacccggcgtgggaaaa gcaacagaaaaagggcaacatgcatgcaaacatattgaaattactggtatatttcttgaatcggacaacgctctacggtc gtcgccattttgaatgtcaatttagaagccaaataaggaattgccgcaaaaattgtagatggcaatgtaaaaatgacatt gggtatgatatggaccattatcctgaggtttgccatacaagatattactgtagaaggtacttagtcatgaccgactgcag ccatgacaggttttacagattagaacgtttggatcatttagcccaaaagttccgtcacagatgtcagatacatgaggaat gggcagcaggtaaagaggacatgcttcagagtcaggactacctacgtgtcggtctcaaccaactcaaggctatgaagaaa aagcacgaagcatttgaaagtgacttggcagctcatcaagacagagtagaacaaatagcagcaattgcccaggaacttaa tgtattagaatatcatgatgtacaaacagttaatgcaagatgtcagaggatatgtgaccagtgggacaggctaggtacat taacaacacaaagacggcagggattggaggaagccgagaggatattagaaaaaatagatcaattacatttggacttcgcc aaaagagcagctcctttcaacaattggttagatggtgcaaaagaagatttaatggacatctttattgtacatacgataga agaaatagatcaactgttacatgcccatgagacgtttaaacagaccttaccggaagcagataaagaattcaacgctatca tggccctggctacggaggttcagcgtctcgcacagagctgtaacttacaactgacagagaacccctacactactgtcaac tctgagagtgggctgggaacaacttctaacagcaattgcaaggaatataaacgaagtggaaaaccagatcttaacaagag attccaagggaattag |
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Protein
| Protein ID | pfu_aug1.0_3794.1_08730.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3794.1_08730.t1 MEQYSDGYMEEEEEWDREGLLDPAWEKQQKKGNMHANILKLLVYFLNRTTLYGRRHFECQFRSQIRNCRKNCRWQCKNDI GYDMDHYPEVCHTRYYCRRYLVMTDCSHDRFYRLERLDHLAQKFRHRCQIHEEWAAGKEDMLQSQDYLRVGLNQLKAMKK KHEAFESDLAAHQDRVEQIAAIAQELNVLEYHDVQTVNARCQRICDQWDRLGTLTTQRRQGLEEAERILEKIDQLHLDFA KRAAPFNNWLDGAKEDLMDIFIVHTIEEIDQLLHAHETFKQTLPEADKEFNAIMALATEVQRLAQSCNLQLTENPYTTVN SESGLGTTSNSNCKEYKRSGKPDLNKRFQGN |
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