Gene
| Gene Model ID | pfu_aug1.0_381.1_36521 |
|---|---|
| Locus | scaffold381.1 : 61666 ... 70158 : + |
| To GenomeBrowser | scaffold381.1:61666..70158 |
| Genes list of scaffold | scaffold381.1 |
| Synonym | pfu_aug2.0_86.1_20195 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_381.1_36521.t1 | 8 | 1 | RHS_repeat | 50 | 58 | 2.7e-09 | 36.9 | 0.33 | 2400.0 | -1.2 |
| pfu_aug1.0_381.1_36521.t1 | 8 | 2 | RHS_repeat | 92 | 128 | 2.7e-09 | 36.9 | 9.8e-05 | 0.73 | 10.0 |
| pfu_aug1.0_381.1_36521.t1 | 8 | 3 | RHS_repeat | 180 | 195 | 2.7e-09 | 36.9 | 0.038 | 290.0 | 1.8 |
| pfu_aug1.0_381.1_36521.t1 | 8 | 4 | RHS_repeat | 272 | 285 | 2.7e-09 | 36.9 | 0.0057 | 42.0 | 4.4 |
| pfu_aug1.0_381.1_36521.t1 | 8 | 5 | RHS_repeat | 399 | 417 | 2.7e-09 | 36.9 | 0.0035 | 26.0 | 5.1 |
| pfu_aug1.0_381.1_36521.t1 | 8 | 6 | RHS_repeat | 422 | 436 | 2.7e-09 | 36.9 | 0.12 | 880.0 | 0.2 |
| pfu_aug1.0_381.1_36521.t1 | 8 | 7 | RHS_repeat | 462 | 495 | 2.7e-09 | 36.9 | 6.3e-05 | 0.47 | 10.7 |
| pfu_aug1.0_381.1_36521.t1 | 8 | 8 | RHS_repeat | 569 | 584 | 2.7e-09 | 36.9 | 0.04 | 300.0 | 1.7 |
| pfu_aug1.0_381.1_36521.t1 | 1 | 1 | Tox-GHH | 868 | 946 | 3.6e-23 | 80.9 | 1.2e-26 | 9.0e-23 | 79.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_381.1_36521.t1 | gi|47227481|emb|CAG04629.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_381.1_36521.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_381.1_36521.t1 atgcttgattcgcatgacaacctattcgacaaaggaaaagtattgctgattaacgggaaaaatctcctgaccgtagagta tgacagagacagtcattccgagaaaatcatcaacaacaaaaaccaacgggaaatcttggcaattacatacgatgactctg gtttacccgttcgtatcaatcctggtaacggccacatccctatgaacatttcctacagccaggctggtcatattacatac tggcggtatggagaaatgtacgagaccctgagatacaacgctgaaggtgcactgacggagaaaacactggcttctaatgg acagtatagatatgtgtacagatacagtaaaaccaggcccacagatgtagtaatgcctgatggagtacagtacagccttg aatacagtaaccaaggagaccttgtcaaggtcagaactcctgaccttggcaaccattactttgccaaggtgacctctatt ggaatccagcgttatttatattatgttccgcagagggaaaatccctattgtgaggaatatgacggtaacggaaaactgct tcatattatataccccagcgagcagaagcgagtaatgcatcgttataacagctattctcaattatccaatgtgttgtttg acgagactgaagttacgtacaagtacaaccccgacaccttacaattggttcagacaaggcttgtagacaaagaaggaaga tatgaatgtgtggaagatttcaattatttaggatctctcatctcgtcctatctggtagacttcagcaaagacagccgaat gaagtcaggaaaatacatatatacatacgattctaacttcagagttacagaagtagatgcaaactttggtgaaggaacaa attctactttgacgaagttcaaatttgacgagacaacaggaaaagtaagttctttatatggattctccgcttcatggatc ctgtcagataaagaggaaataagtgatggccaactcaaaatcacccgtggctatgataaatatgcgcgtctgaacagtgt aacatacagcataaaaagccaggatgtatttgtactcagaatagggtatgacttcatgaatcgtattcagggttgggata gtcatataggaactgatgctgccagtaaatatcagtatatttataatataaacggatatataaaggagataatcctgaat ggtcagtcaacatggaggtttggatataacaataacggaaatatcaatagtgtgtgggagggcggcagtactcgtagctt ggattatgacgttggagacagaatacgcagctctggaactaaagtattcaaatttgatccggatggtttcatgattttca ggaaagatcatagcattttattcaactcaaaaggacagttaaaatctgtatcaaaacctaatgagtatcggttcttctac tcctatgattctaccgggagacttgtttccatggaaacaaatggtggagaaatgatgcagtacttttacgctgatgtagt tcatcctcttcgtatcacccacacatatagatatggcctacgagaagaatttacggaatatttgtacgaaacagaaggca agcttataggacttagaagagatggaaaccaatattacatagccactgatcccatgggatctccaatcgctgtgtttgat tttgatggtcaaatggtcaaggtcatgacttaccatcctctaggtcgggtcactaaggatacaaatccagactttgaact ctgttttggattccagggtggattgtacaatcctgtgacagagttagtaatgcttggcatgcgtacatacgacactgata atggtcactggatatctcctgattatagcggtactctcagcaatctgaagaaggtacctgaaaatcctatcctgaccaac aactaccagtatcgtgacatcatcaatgtgcagagaaagaagcagaagtttccaatgctagatgtgtcagattggttgtc agtgctaggctttgacatggacagtttggttcctgacatctcgtataatggagaaataaggaagagaagccaaggtacat catattccctgctgcctatgtcgtctgccttcgagtgtacgtttgtccaggatatgaaaggcctaatgaagatgtctgtt gtaccgcagtctaaagtgtccccattactctccagtagagatattagtcctattgcagtaccaggaattctgggaaatgg aattactgtgtcttatcatgaaggaaaagcagtcgttagttacgcatctacagctgcaccctggtctaagcagctcgctc aagtacttataaatggatcatatatcgtagattttaaacataatattagaggaaaggacattcattatttgctaaagtat gatgtttccaaagcggaagatgagataagaattctgggattggaagctaataaaaatttgtattctatgcatggtgtgaa tatatcgatacataaagtggagcataaagcaaggttccacccaaatagatatcaggagatagatattagactcaaaggaa aatattccgttattaatattcgttacggctcaactgtagaccgtgagagacaaaggattctgaatcatagtaaagagagg gcagtacaacatgcgtgggctacagaaagatggcttttagaaaatggcttacctccgaaatacagacagtggactgatga tgaaaaattgcaaataaaaacacttggtctagctgaaggttacaaaggacattaccttaaagatgtgtatgattatcctg aattagcagacgattgtaataatatcagatttatcaaagataagaggtag |
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Protein
| Protein ID | pfu_aug1.0_381.1_36521.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_381.1_36521.t1 MLDSHDNLFDKGKVLLINGKNLLTVEYDRDSHSEKIINNKNQREILAITYDDSGLPVRINPGNGHIPMNISYSQAGHITY WRYGEMYETLRYNAEGALTEKTLASNGQYRYVYRYSKTRPTDVVMPDGVQYSLEYSNQGDLVKVRTPDLGNHYFAKVTSI GIQRYLYYVPQRENPYCEEYDGNGKLLHIIYPSEQKRVMHRYNSYSQLSNVLFDETEVTYKYNPDTLQLVQTRLVDKEGR YECVEDFNYLGSLISSYLVDFSKDSRMKSGKYIYTYDSNFRVTEVDANFGEGTNSTLTKFKFDETTGKVSSLYGFSASWI LSDKEEISDGQLKITRGYDKYARLNSVTYSIKSQDVFVLRIGYDFMNRIQGWDSHIGTDAASKYQYIYNINGYIKEIILN GQSTWRFGYNNNGNINSVWEGGSTRSLDYDVGDRIRSSGTKVFKFDPDGFMIFRKDHSILFNSKGQLKSVSKPNEYRFFY SYDSTGRLVSMETNGGEMMQYFYADVVHPLRITHTYRYGLREEFTEYLYETEGKLIGLRRDGNQYYIATDPMGSPIAVFD FDGQMVKVMTYHPLGRVTKDTNPDFELCFGFQGGLYNPVTELVMLGMRTYDTDNGHWISPDYSGTLSNLKKVPENPILTN NYQYRDIINVQRKKQKFPMLDVSDWLSVLGFDMDSLVPDISYNGEIRKRSQGTSYSLLPMSSAFECTFVQDMKGLMKMSV VPQSKVSPLLSSRDISPIAVPGILGNGITVSYHEGKAVVSYASTAAPWSKQLAQVLINGSYIVDFKHNIRGKDIHYLLKY DVSKAEDEIRILGLEANKNLYSMHGVNISIHKVEHKARFHPNRYQEIDIRLKGKYSVINIRYGSTVDRERQRILNHSKER AVQHAWATERWLLENGLPPKYRQWTDDEKLQIKTLGLAEGYKGHYLKDVYDYPELADDCNNIRFIKDKR |
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