Gene
| Gene Model ID | pfu_aug1.0_38123.1_70258 |
|---|---|
| Locus | scaffold38123.1 : 1 ... 6142 : + |
| To GenomeBrowser | scaffold38123.1:1..6142 |
| Genes list of scaffold | scaffold38123.1 |
| Synonym | pfu_aug2.0_164.1_13710 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_38123.1_70258.t1 | 1 | 1 | Nol1_Nop2_Fmu | 109 | 290 | 4.2e-39 | 134.6 | 5.5001e-42 | 5.5e-39 | 134.2 |
| pfu_aug1.0_38123.1_70258.t1 | 1 | 1 | FtsJ | 122 | 280 | 4.9e-07 | 29.9 | 7.6e-10 | 7.5e-07 | 29.2 |
| pfu_aug1.0_38123.1_70258.t1 | 1 | 1 | Methyltransf_31 | 125 | 275 | 1.9e-10 | 40.5 | 5.7e-13 | 5.6e-10 | 38.9 |
| pfu_aug1.0_38123.1_70258.t1 | 1 | 1 | Methyltransf_18 | 126 | 263 | 1.7e-08 | 35.0 | 4.4e-11 | 4.3e-08 | 33.7 |
| pfu_aug1.0_38123.1_70258.t1 | 1 | 1 | Methyltransf_26 | 128 | 263 | 2.9e-07 | 30.5 | 7.7e-10 | 7.6e-07 | 29.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_38123.1_70258.t1 | gi|260783662|ref|XP_002586892.1| | hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_38123.1_70258.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_38123.1_70258.t1 agtgaaaaagaagtgattgtagatttatcatgcggcatgtcggtgttacgtggtgctgatgtcttcgtgcagggaatcat gggagcaccaccaaacatgctcgccggtgaccatgtttctgtgtatgcagatttagacggtaaatgcctgaagggatcaa ataaagtctacactggaaataagacatatgttggtaatggagtcgctcaacgtagtcgtgctgaaatcttcaaaactgaa aatcctttaagtggtgtaggagttcttatgactgagcctttatatgaagcccccagcctcagtgacttgtccccccacat tacatatccccagaacttcccctcggcggtatgtgtgacggtgttagacccccaaccaggggaggtcatcctggatatgt gtgcggctcctggagggaagacaactcatatagcaactaacatgaaggataagggacgggttgtagctatagacaagaca gaacagaagataagcagagtgaaaagaaatgctgacaattggaatcttacctgtatagagtgctatgccttcgattcaac aaaatcctgtgatgtcaattctgattgtaataatgggccaccctatccaccagagacgtttgataggatactattggacg caccctgtagtgctttgggtcagaggccttcactcaaaaaccccatgtccctgaagacactaaagtcacaccctgtatgt cagagaaagctgctggaaaaggcagtagatctattgaagcctggtggagtattagtgtacagtacatgtaccataacact ggaagagaacgaggaacaagtagcatgggccatcaataaattcccgtgcttgactctagatgaacagatcatctatcagc agaataccttctgcaacccagaaaaccgaggcagacaacatatcaatcagccctcatag |
|
Protein
| Protein ID | pfu_aug1.0_38123.1_70258.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_38123.1_70258.t1 SEKEVIVDLSCGMSVLRGADVFVQGIMGAPPNMLAGDHVSVYADLDGKCLKGSNKVYTGNKTYVGNGVAQRSRAEIFKTE NPLSGVGVLMTEPLYEAPSLSDLSPHITYPQNFPSAVCVTVLDPQPGEVILDMCAAPGGKTTHIATNMKDKGRVVAIDKT EQKISRVKRNADNWNLTCIECYAFDSTKSCDVNSDCNNGPPYPPETFDRILLDAPCSALGQRPSLKNPMSLKTLKSHPVC QRKLLEKAVDLLKPGGVLVYSTCTITLEENEEQVAWAINKFPCLTLDEQIIYQQNTFCNPENRGRQHINQPS |
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