Gene
| Gene Model ID | pfu_aug1.0_382.1_36526 |
|---|---|
| Locus | scaffold382.1 : 63266 ... 76426 : + |
| To GenomeBrowser | scaffold382.1:63266..76426 |
| Genes list of scaffold | scaffold382.1 |
| Synonym | pfu_aug2.0_505.1_17500 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_382.1_36526.t1 | 4 | 1 | WD40 | 15 | 34 | 1.4e-16 | 59.6 | 0.021 | 100.0 | 3.0 |
| pfu_aug1.0_382.1_36526.t1 | 4 | 2 | WD40 | 51 | 83 | 1.4e-16 | 59.6 | 5.7e-09 | 2.8e-05 | 23.8 |
| pfu_aug1.0_382.1_36526.t1 | 4 | 3 | WD40 | 90 | 121 | 1.4e-16 | 59.6 | 2.4e-09 | 1.2e-05 | 25.0 |
| pfu_aug1.0_382.1_36526.t1 | 4 | 4 | WD40 | 136 | 160 | 1.4e-16 | 59.6 | 0.0058 | 29.0 | 4.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_382.1_36526.t1 | gi|260795593|ref|XP_002592789.1| | hypothetical protein BRAFLDRAFT_275667 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_382.1_36526.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_382.1_36526.t1 atggtcaggttaagatatggtcaagaagtggaatgttacggttcaacagtatatggaatagcatggggtcctgattcaga tcaagtgctcttcacaaatggacgtcaacttgtaataaaaactcttcaagcaaatgctaaacctacaatgtggaaagctc atgaaggagtgatactaaatgtagattggaatcctgtaaataacctcataatctcaggagcagaggattgtaggtataag gtatgggatacttatggcagaatcatgtacagtagctcagctcatgattatcccattacatcagtggcatggacacccaa tggagaactgtttgctgtcggatcatttaacacactgaggctgtgtgatcaggctgggtggtcatatgctttagagaaac caaatactggtagcttgttcaaattatcatggtcaagcgatggtactcaagtagcaggggcttgtgggaacggccaggtg ctcatagcaaatgttattgaaaagagaatagaatggaaaaactttgaagctgttgttgctagtagtaaacaggttcatgt tcgtaatgtagccaatgacgtcacagaaaaactagatttccgagacagaataatcaaggtttctctctgccataatcacc ttgttgttgccacatctctacagtgttatatatacaatacaaagaattggaatactccaatgatctttgatttgaaagag ggcaatatctccatgattttacaagcagaaagacattttatgatggtggattctgtaggcgtttacatatattcgtatga cggtagacttacgtgttcacctaagtatcctgggatgagggcagatatcctcaactatcagactgtctcactcagtaatg acactgtcgccatcagggacaaaactgacgaaaaattgatttatgcatttgatgctcagaatggaaaacttttaggagat ggaaaacctataagtcataagttagaggtgatggaggtagcattagatcagtgtggaccacccaccgagagaaggatggc catcatcgacaaaaaccgagatctttatttaacgtcagtcagaacgtttggtacagacagaaagtcagtcaaattaggaa atatgatacagtcattacaatggaatgacagtgctaacatgctggcagctttagccgacggtaaatttaccgtgtggtat taccctaactctgtgtatgtagacagagatctcggagcaaagactgtgttctcaaaggaagcaagtgagtttggtaaaaa cccacatcttctgcagtttgttggtaaccacgttgttatacgtcgagccgaggggtcgttagtcagtaccagtatatcac cgtacccagccatacttcacagttacgtacaagcaggacgatgggacgatgctgttaggctatgtagatttgtcaaggat gaggtattatggtcatgtctagccgcaatgtctgcttactccaaagatctcaacacggcagaagtggcctatgcagccat caaagatgcagagaaagtacaattcatcatcaatatcaaagatattccagtaaaggaagctcgtaatgctgagatggccc tcctctgtgggagcccccaggatgctgagtccatactgctcacagctggacttaccttcagggctataatgctcaatata caactctataactgggaaagagcactagaactggccataaagcacaaaacacatgttgatactgtattaggatacagaaa aagatacttagaacagtttgacaaaaaagaaaagaataaacggttcttgcaatacagtgaaggaattgagattgactggg aaaaaattgaagcaaaaatagagatggaatatcagaaggaacgagagcgtccagagaggagtagtatggcatcaacggca aacctgcaagggggtgaaaggtcaggcggaggtgaaagggcaaggtcaaggccacaacatacgggtccatcaaactga |
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Protein
| Protein ID | pfu_aug1.0_382.1_36526.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_382.1_36526.t1 MVRLRYGQEVECYGSTVYGIAWGPDSDQVLFTNGRQLVIKTLQANAKPTMWKAHEGVILNVDWNPVNNLIISGAEDCRYK VWDTYGRIMYSSSAHDYPITSVAWTPNGELFAVGSFNTLRLCDQAGWSYALEKPNTGSLFKLSWSSDGTQVAGACGNGQV LIANVIEKRIEWKNFEAVVASSKQVHVRNVANDVTEKLDFRDRIIKVSLCHNHLVVATSLQCYIYNTKNWNTPMIFDLKE GNISMILQAERHFMMVDSVGVYIYSYDGRLTCSPKYPGMRADILNYQTVSLSNDTVAIRDKTDEKLIYAFDAQNGKLLGD GKPISHKLEVMEVALDQCGPPTERRMAIIDKNRDLYLTSVRTFGTDRKSVKLGNMIQSLQWNDSANMLAALADGKFTVWY YPNSVYVDRDLGAKTVFSKEASEFGKNPHLLQFVGNHVVIRRAEGSLVSTSISPYPAILHSYVQAGRWDDAVRLCRFVKD EVLWSCLAAMSAYSKDLNTAEVAYAAIKDAEKVQFIINIKDIPVKEARNAEMALLCGSPQDAESILLTAGLTFRAIMLNI QLYNWERALELAIKHKTHVDTVLGYRKRYLEQFDKKEKNKRFLQYSEGIEIDWEKIEAKIEMEYQKERERPERSSMASTA NLQGGERSGGGERARSRPQHTGPSN |
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