Gene
| Gene Model ID | pfu_aug1.0_3823.1_08734 |
|---|---|
| Locus | scaffold3823.1 : 15226 ... 25605 : - |
| To GenomeBrowser | scaffold3823.1:15226..25605 |
| Genes list of scaffold | scaffold3823.1 |
| Synonym | pfu_aug2.0_174.1_13728 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3823.1_08734.t1 | 3 | 1 | CUB | 60 | 118 | 2.94273e-44 | 149.6 | 4.2e-15 | 1.6e-11 | 44.2 |
| pfu_aug1.0_3823.1_08734.t1 | 4 | 1 | Ldl_recept_a | 129 | 163 | 3.2e-18 | 65.3 | 7.5e-12 | 2.8e-08 | 33.5 |
| pfu_aug1.0_3823.1_08734.t1 | 4 | 2 | Ldl_recept_a | 167 | 202 | 3.2e-18 | 65.3 | 4.6e-14 | 1.7e-10 | 40.5 |
| pfu_aug1.0_3823.1_08734.t1 | 3 | 2 | CUB | 200 | 243 | 2.94273e-44 | 149.6 | 9.3e-10 | 3.4e-06 | 27.0 |
| pfu_aug1.0_3823.1_08734.t1 | 3 | 3 | CUB | 266 | 376 | 2.94273e-44 | 149.6 | 1.4e-24 | 5.2e-21 | 74.7 |
| pfu_aug1.0_3823.1_08734.t1 | 1 | 1 | Trypsin | 382 | 507 | 1.3e-24 | 87.0 | 6.5e-28 | 2.4e-24 | 86.1 |
| pfu_aug1.0_3823.1_08734.t1 | 4 | 3 | Ldl_recept_a | 441 | 455 | 3.2e-18 | 65.3 | 0.31 | 1100.0 | -0.5 |
| pfu_aug1.0_3823.1_08734.t1 | 4 | 4 | Ldl_recept_a | 505 | 520 | 3.2e-18 | 65.3 | 0.025 | 93.0 | 3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3823.1_08734.t1 | gi|260802264|ref|XP_002596012.1| | hypothetical protein BRAFLDRAFT_123740 [Branchiostoma floridae] | 4.0e-28 |
Transcript
| Transcript ID | pfu_aug1.0_3823.1_08734.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3823.1_08734.t1 atgtttgtaaacggcgctttcatcgttattgcatgcaaacgccgcatagacttcttgttttgttccatgcatttcaaatc taggttgcctgacctcacgaggtacatttatgagcgactgactttgtcactgaattatttacgatgcaatgaaaatattg aacgttataacgatgtcctcaatgttagaagttgcgattacgactacctggcaatttatgacggaatcagtaaatcggcg aatctgattgggaaattttgcggcggagatgacgtagaagttgtgtcatctggggaaaatctttatttagaatttatttc tgacgacagcggacaagcctctggattcagattaaaaattttgtcagagcggagatcgatcggctgcggaagaggaaatt ataagtgcgacaaccagatatgtgtgccacgtaaatatatatgtgatgacgtagatgactgtagagacggaagtgatgaa caaaaatgtaatacaaaaaactgtgagaaaacagagtatgaatgttcggaccagtcgtgtatacctaacacgtggatctg tgatggcgaaaatgactgtggagatggagccgatgaacaacattgtaaccaacaaactggcgagtattgtggagataaga agcctgatccaatcatcattcctggaaatcacggcattgttacatttcatacggacgatgaaacgagtatgaagggattt agaattcattggacagctgtagacgcggatcccagtctactgactccaacacaaaacccatctggtccttccggttgtga cagagtgatccattatacagcaccaggaaaaatccagactccaggattcgatccaagtaaagaatacaagggcaatacga cctgtgtttggagaatctacggaccagatggttatgtcattcgacttcacttcgacaacttcggtgtggagaaatcaaga gaatgtcagtatgaccatgtgaaagtgttcgatgggccaagtacaggagacgacctgatagcgacaatgtgtggagagag actacctcatgacgagtggtctaaatcaccaaacatgatggtggtgttctacagtgatggcgcctacaatgaagtcggca tgaaagcgagtgcacgaagtcctcgccactggattgtatttgctggaaaacaccatgataataaaactgacccacaccaa caaagtcgggaattagaggcagtttacatgcacgaaggttacgacattgaccaagtcgacactgacgtcactcttctgaa gcttaaatctccacttaccatgaatcagtacgttagcacagtttgtctacctcaaacacttgtaccagacaacacggact gtatgacaaccggatggggagataccaaacgtctattgaagcaagcattactgccagttgtgaatatagatcagtgtaac agtactgagtacctggatggagatgccacggataatatgatttgtgcaggatttgacaaaggtggaattgactcgtgtca gcggttacagaggagatgtcaaaaatataaatgtttacgacgaacagacaacggacggcgcgctatgacaatacctcact tgagctcgccgctcaagtga |
|
Protein
| Protein ID | pfu_aug1.0_3823.1_08734.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3823.1_08734.t1 MFVNGAFIVIACKRRIDFLFCSMHFKSRLPDLTRYIYERLTLSLNYLRCNENIERYNDVLNVRSCDYDYLAIYDGISKSA NLIGKFCGGDDVEVVSSGENLYLEFISDDSGQASGFRLKILSERRSIGCGRGNYKCDNQICVPRKYICDDVDDCRDGSDE QKCNTKNCEKTEYECSDQSCIPNTWICDGENDCGDGADEQHCNQQTGEYCGDKKPDPIIIPGNHGIVTFHTDDETSMKGF RIHWTAVDADPSLLTPTQNPSGPSGCDRVIHYTAPGKIQTPGFDPSKEYKGNTTCVWRIYGPDGYVIRLHFDNFGVEKSR ECQYDHVKVFDGPSTGDDLIATMCGERLPHDEWSKSPNMMVVFYSDGAYNEVGMKASARSPRHWIVFAGKHHDNKTDPHQ QSRELEAVYMHEGYDIDQVDTDVTLLKLKSPLTMNQYVSTVCLPQTLVPDNTDCMTTGWGDTKRLLKQALLPVVNIDQCN STEYLDGDATDNMICAGFDKGGIDSCQRLQRRCQKYKCLRRTDNGRRAMTIPHLSSPLK |
|