Gene
| Gene Model ID | pfu_aug1.0_38357.1_70270 |
|---|---|
| Locus | scaffold38357.1 : 1 ... 6089 : - |
| To GenomeBrowser | scaffold38357.1:1..6089 |
| Genes list of scaffold | scaffold38357.1 |
| Synonym | pfu_aug2.0_179.1_30365 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_38357.1_70270.t1 | 1 | 1 | EMP70 | 23 | 282 | 0.0 | 242.0 | 0.0 | 0.0 | 241.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_38357.1_70270.t1 | gi|260803173|ref|XP_002596465.1| | hypothetical protein BRAFLDRAFT_286243 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_38357.1_70270.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_38357.1_70270.t1 tatgaggataatgaggaggtggtgctatggatgaacacagtgggaccataccataacagacaagaaacttactcctactt ctccctacctttttgtgctggtccaaagcaaagcataggacattaccatgagaccctgggtgaggccctacaaggtacag agttggagttcagcggtctggacattgatttcaaaggtgatttgcctaagacagaatattgtagcatagaactgtcagaa gagaagtatcaagcctttgtgtatgctgtgaagaatcattactggtaccaaatgtatattgatgacctgccaatatgggg tatagtgggagagatcagtgacggagattactatgtgtggactcacaaaagatttgatttgggccacaacaacaatcaga ttgtggacgtcaatcttaccagtgaagccaagaaaaaactggaaccaaatgcaaaaattgcatttacatacgaggtccat tgggttgcgtcatccattaagtttgacaagagatttgacaagtacttggaccccaatttctttcaacacagaattcactg gttcagcatctttaactcgttcatgatggtgatattcctggtgggtttggtcagtatgatcttaatgaggacactgagga aagactacgcacgctacagcaaggaagaggacctcgatgacatggaaaaggatcttggtgacgagtatggttggaagcag gttcatggggatgttttcagaccagcatctaatcccatgttattctcagcactcataggtacaggttaccacatatcagt ggttactctatgtgtcatcgtctttgccatactgggcgatctctatactga |
|
Protein
| Protein ID | pfu_aug1.0_38357.1_70270.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_38357.1_70270.t1 YEDNEEVVLWMNTVGPYHNRQETYSYFSLPFCAGPKQSIGHYHETLGEALQGTELEFSGLDIDFKGDLPKTEYCSIELSE EKYQAFVYAVKNHYWYQMYIDDLPIWGIVGEISDGDYYVWTHKRFDLGHNNNQIVDVNLTSEAKKKLEPNAKIAFTYEVH WVASSIKFDKRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEDLDDMEKDLGDEYGWKQ VHGDVFRPASNPMLFSALIGTGYHISVVTLCVIVFAILGDLYT |
|