Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_38467.1_12333
Locus scaffold38467.1 : 1 ... 10930 : +
To GenomeBrowser scaffold38467.1:1..10930
Genes list of scaffold scaffold38467.1
Synonym pfu_aug2.0_60.1_00160

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_38467.1_12333.t1 1 1 adh_short 1 59 2.2e-07 30.9 2.0e-11 2.9e-07 30.5

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_38467.1_12333.t1
Definition-
>pfu_aug1.0_38467.1_12333.t1
attaataatgctggtattgggagagtagcagcgtttgctgatatgccggaggagatttaccgtaatgtgatcgagaccaa
tcaaaccacacctttcttcctgacacagctagccatacctcatctgaagataagcaaaggcaatattgtaaatatttcaa
gtattagttctaaagcaaggtgcttttaccaaacaagcaagcttcgaacttcggtcaaacatcgaaattgcattatgacg
tcatcatggaatttctcaaaaattttccgcgttcggaagggtcaattgtag

Protein
Protein IDpfu_aug1.0_38467.1_12333.t1
Definition-
>pfu_aug1.0_38467.1_12333.t1
INNAGIGRVAAFADMPEEIYRNVIETNQTTPFFLTQLAIPHLKISKGNIVNISSISSKARCFYQTSKLRTSVKHRNCIMT
SSWNFSKIFRVRKGQL

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