Gene
| Gene Model ID | pfu_aug1.0_3850.1_37727 |
|---|---|
| Locus | scaffold3850.1 : 3722 ... 10585 : - |
| To GenomeBrowser | scaffold3850.1:3722..10585 |
| Genes list of scaffold | scaffold3850.1 |
| Synonym | NA |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to MgC1q53. 108 bits, 5e-22 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3850.1_37727.t1 | 2 | 1 | C1q | 21 | 43 | 1.3e-24 | 86.5 | 0.26 | 2000.0 | -1.3 |
| pfu_aug1.0_3850.1_37727.t1 | 2 | 2 | C1q | 65 | 182 | 1.3e-24 | 86.5 | 3.5e-28 | 2.6e-24 | 85.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| mantle | 2 |
| mantleEdge | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3850.1_37727.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3850.1_37727.t1 atggtttacattaatagatattgctgctttttattaccatttttggccctgacatttcggttcactgttgtatcatctaa taatttgcaaaagcaagtagacaagttctgtggcagattcgctactccaaagaaatgtgactgtggcgtaggaaaaccaa agaaggttgtttcatttctaacctggtattccaagaagaaaactcaattgggggaccacgaagcggtcaaatttgataag gtcattgaaaatatcggaggcggatataatcctgcaacaggcaaattcaccgctcctgtgtcgggaatctacacaatatc ggtgtccgtcatgagtgaacctacaaatcaaatgcacctaggtattatgaagaacaaccaactcttggtcgttttatttt cgaatgcaaaaacacatccacaggcttccaacaccttgaacctattcttgaagagaaatgatacagtatgggtacagcga cgctccggacgggtcctccatgctcattccacaggaccatataacgtgttctcaggagtccttgttactcggatgtaa |
|
Protein
| Protein ID | pfu_aug1.0_3850.1_37727.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3850.1_37727.t1 MVYINRYCCFLLPFLALTFRFTVVSSNNLQKQVDKFCGRFATPKKCDCGVGKPKKVVSFLTWYSKKKTQLGDHEAVKFDK VIENIGGGYNPATGKFTAPVSGIYTISVSVMSEPTNQMHLGIMKNNQLLVVLFSNAKTHPQASNTLNLFLKRNDTVWVQR RSGRVLHAHSTGPYNVFSGVLVTRM |
|