Gene
Gene Model ID | pfu_aug1.0_3850.1_37727 |
---|---|
Locus | scaffold3850.1 : 3722 ... 10585 : - |
To GenomeBrowser | scaffold3850.1:3722..10585 |
Genes list of scaffold | scaffold3850.1 |
Synonym | NA |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | C1q domain containing protein |
Description | Best hit to MgC1q53. 108 bits, 5e-22 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3850.1_37727.t1 | 2 | 1 | C1q | 21 | 43 | 1.3e-24 | 86.5 | 0.26 | 2000.0 | -1.3 |
pfu_aug1.0_3850.1_37727.t1 | 2 | 2 | C1q | 65 | 182 | 1.3e-24 | 86.5 | 3.5e-28 | 2.6e-24 | 85.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 3 |
>Adult tissues | |
mantle | 2 |
mantleEdge | 1 |
Transcript
Transcript ID | pfu_aug1.0_3850.1_37727.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3850.1_37727.t1 atggtttacattaatagatattgctgctttttattaccatttttggccctgacatttcggttcactgttgtatcatctaa taatttgcaaaagcaagtagacaagttctgtggcagattcgctactccaaagaaatgtgactgtggcgtaggaaaaccaa agaaggttgtttcatttctaacctggtattccaagaagaaaactcaattgggggaccacgaagcggtcaaatttgataag gtcattgaaaatatcggaggcggatataatcctgcaacaggcaaattcaccgctcctgtgtcgggaatctacacaatatc ggtgtccgtcatgagtgaacctacaaatcaaatgcacctaggtattatgaagaacaaccaactcttggtcgttttatttt cgaatgcaaaaacacatccacaggcttccaacaccttgaacctattcttgaagagaaatgatacagtatgggtacagcga cgctccggacgggtcctccatgctcattccacaggaccatataacgtgttctcaggagtccttgttactcggatgtaa |
Protein
Protein ID | pfu_aug1.0_3850.1_37727.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3850.1_37727.t1 MVYINRYCCFLLPFLALTFRFTVVSSNNLQKQVDKFCGRFATPKKCDCGVGKPKKVVSFLTWYSKKKTQLGDHEAVKFDK VIENIGGGYNPATGKFTAPVSGIYTISVSVMSEPTNQMHLGIMKNNQLLVVLFSNAKTHPQASNTLNLFLKRNDTVWVQR RSGRVLHAHSTGPYNVFSGVLVTRM |