pfu_aug1.0_38552.1_41081: Genome browser

Gene

Gene Model ID	pfu_aug1.0_38552.1_41081
Locus	scaffold38552.1 : 1 ... 6025 : +
To GenomeBrowser	scaffold38552.1:1..6025
Genes list of scaffold	scaffold38552.1
Synonym	pfu_aug2.0_51.1_03504

Manual annotation

Hmmer Search for Pfam

query	Total	ID	Target	From	To	Eval	Score	cEval	iEval	Score
pfu_aug1.0_38552.1_41081.t1	4	1	TPR_11	1	37	2.0e-35	120.2	5.7e-11	4.7e-08	32.5
pfu_aug1.0_38552.1_41081.t1	4	1	TPR_1	8	34	4.8e-31	105.0	4.5e-10	3.7e-07	29.4
pfu_aug1.0_38552.1_41081.t1	4	1	TPR_2	8	34	1.1e-23	81.2	1.9e-08	1.6e-05	24.4
pfu_aug1.0_38552.1_41081.t1	3	1	TPR_16	8	34	1.5e-16	60.5	0.0054	4.4	8.0
pfu_aug1.0_38552.1_41081.t1	3	1	TPR_6	11	34	3.6e-06	27.0	0.0051	4.2	8.0
pfu_aug1.0_38552.1_41081.t1	3	1	TPR_19	12	37	1.4e-12	47.7	0.00027	0.22	11.8
pfu_aug1.0_38552.1_41081.t1	4	1	TPR_8	13	34	6.3e-15	53.7	4.9e-05	0.041	13.6
pfu_aug1.0_38552.1_41081.t1	4	1	TPR_12	13	31	4.1e-09	36.2	0.014	11.0	5.9
pfu_aug1.0_38552.1_41081.t1	5	1	TPR_14	15	37	2.4e-12	46.3	0.0016	1.3	9.8
pfu_aug1.0_38552.1_41081.t1	3	1	TPR_9	15	34	1.3e-06	28.0	0.4	330.0	1.2
pfu_aug1.0_38552.1_41081.t1	3	1	NARP1	18	44	8.5e-06	24.8	0.16	130.0	1.0
pfu_aug1.0_38552.1_41081.t1	4	1	TPR_17	23	36	2.8e-11	42.6	0.00017	0.14	12.4
pfu_aug1.0_38552.1_41081.t1	4	2	TPR_11	93	159	2.0e-35	120.2	1.1e-23	9.2e-21	73.2
pfu_aug1.0_38552.1_41081.t1	3	2	NARP1	98	138	8.5e-06	24.8	0.00069	0.57	8.8
pfu_aug1.0_38552.1_41081.t1	4	2	TPR_1	100	127	4.8e-31	105.0	4.5e-10	3.7e-07	29.4
pfu_aug1.0_38552.1_41081.t1	4	2	TPR_2	100	127	1.1e-23	81.2	4.6e-09	3.8e-06	26.3
pfu_aug1.0_38552.1_41081.t1	3	2	TPR_16	100	159	1.5e-16	60.5	6.3e-11	5.2e-08	33.3
pfu_aug1.0_38552.1_41081.t1	4	2	TPR_8	101	126	6.3e-15	53.7	3.0e-05	0.024	14.3
pfu_aug1.0_38552.1_41081.t1	4	2	TPR_12	101	123	4.1e-09	36.2	0.0027	2.3	8.2
pfu_aug1.0_38552.1_41081.t1	3	2	TPR_19	104	147	1.4e-12	47.7	2.2e-07	0.00018	21.7
pfu_aug1.0_38552.1_41081.t1	5	2	TPR_14	104	136	2.4e-12	46.3	1.1e-05	0.0091	16.5
pfu_aug1.0_38552.1_41081.t1	4	3	TPR_12	104	159	4.1e-09	36.2	4.7e-06	0.0039	17.1
pfu_aug1.0_38552.1_41081.t1	3	2	TPR_9	104	159	1.3e-06	28.0	1.1e-06	0.00089	19.0
pfu_aug1.0_38552.1_41081.t1	3	2	TPR_6	105	126	3.6e-06	27.0	0.00062	0.51	10.9
pfu_aug1.0_38552.1_41081.t1	4	2	TPR_17	116	140	2.8e-11	42.6	1.9e-06	0.0016	18.5
pfu_aug1.0_38552.1_41081.t1	4	4	TPR_12	125	193	4.1e-09	36.2	6.3e-08	5.2e-05	23.1
pfu_aug1.0_38552.1_41081.t1	4	3	TPR_1	128	161	4.8e-31	105.0	8.9e-10	7.3e-07	28.5
pfu_aug1.0_38552.1_41081.t1	4	3	TPR_2	128	160	1.1e-23	81.2	2.1e-05	0.018	14.9
pfu_aug1.0_38552.1_41081.t1	4	3	TPR_8	128	160	6.3e-15	53.7	0.00027	0.22	11.3
pfu_aug1.0_38552.1_41081.t1	5	3	TPR_14	130	167	2.4e-12	46.3	0.35	290.0	2.5
pfu_aug1.0_38552.1_41081.t1	3	3	NARP1	135	192	8.5e-06	24.8	2.6e-05	0.021	13.5
pfu_aug1.0_38552.1_41081.t1	3	3	TPR_9	146	198	1.3e-06	28.0	0.00037	0.3	10.9
pfu_aug1.0_38552.1_41081.t1	4	3	TPR_17	152	181	2.8e-11	42.6	0.051	42.0	4.6
pfu_aug1.0_38552.1_41081.t1	4	4	TPR_1	163	195	4.8e-31	105.0	8.2e-09	6.8e-06	25.4
pfu_aug1.0_38552.1_41081.t1	4	4	TPR_8	163	194	6.3e-15	53.7	6.8e-06	0.0056	16.3
pfu_aug1.0_38552.1_41081.t1	4	4	TPR_2	164	194	1.1e-23	81.2	2.4e-06	0.002	17.9
pfu_aug1.0_38552.1_41081.t1	4	3	TPR_11	165	205	2.0e-35	120.2	3.9e-06	0.0032	17.0
pfu_aug1.0_38552.1_41081.t1	5	4	TPR_14	165	201	2.4e-12	46.3	4.8e-05	0.04	14.5
pfu_aug1.0_38552.1_41081.t1	3	3	TPR_6	165	194	3.6e-06	27.0	0.0098	8.1	7.1
pfu_aug1.0_38552.1_41081.t1	3	3	TPR_16	168	216	1.5e-16	60.5	1.7e-05	0.014	16.0
pfu_aug1.0_38552.1_41081.t1	3	3	TPR_19	174	217	1.4e-12	47.7	1.0e-05	0.0085	16.4
pfu_aug1.0_38552.1_41081.t1	4	4	TPR_17	184	194	2.8e-11	42.6	0.11	91.0	3.6
pfu_aug1.0_38552.1_41081.t1	4	4	TPR_11	196	221	2.0e-35	120.2	0.069	57.0	3.4
pfu_aug1.0_38552.1_41081.t1	5	5	TPR_14	196	221	2.4e-12	46.3	0.12	100.0	4.0

Blast Hit to nr / sp

query	Subject ID	Subject Name	evalue
pfu_aug1.0_38552.1_41081.t1	gi\|327286578\|ref\|XP_003228007.1\|	PREDICTED: stress-induced-phosphoprotein 1 [Anolis carolinensis]	0.0

Expression profile

(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries	EST count
>Embryonic/Larval stages
mix	1
egg-Dshape	2
>Adult tissues
Dshape	1
adductorMuscle	1
mantle	1
pearlSac	1

Transcript

Transcript ID	pfu_aug1.0_38552.1_41081.t1
Definition	-
>pfu_aug1.0_38552.1_41081.t1 gctataaaagaaaaagaatctgggaatgaagcatataaaaagaaagattttgtaacagccctacaacattacgaaaaagc catagaactcgatcctaacaatattacatttgaattgaacaaagcaggaatagatcatacactctcctttctttgtaata tgacacgcaagcctcatatccttaacaatgagagtattggattccttccctacagaagttcttacatccagaagcgtatc aaggagaaggagaggttagagtatctgaatcctgaaatagctctggaggagaaaactaagggaaatgaattgttccagtc tggtaaatatccagaagctaaaaagcactatgatgaggcaattaaaagaaaccctgatgatgccaagctttatagtaata gagctgcatgttatactaaattaatggaatttaacctggctctcagagatgcagaagaatgtattagattagacccaaaa tttattaaaggttatttaaggaaaggtggtatcttacaagcgatgaaggagccaacaaaagcatccgctgcataccagaa agcattagatatagaccctaaatgtgacgaagcacaaaaaggatatagggaagctctgatggcggagggtagcgacccag aggctgttaagaggcgtgctatggccgatccggaggtacaaaatatactgagtgatccagccatgcagcttatactacaa caaatgcagaaagatcctaatgccgtgcgagaacatttgaaaaatccagaaattgccgcaaagatagagaaattattaga atgtgggatcattgccattcgttga

Transcript ID

pfu_aug1.0_38552.1_41081.t1

Definition

>pfu_aug1.0_38552.1_41081.t1
gctataaaagaaaaagaatctgggaatgaagcatataaaaagaaagattttgtaacagccctacaacattacgaaaaagc
catagaactcgatcctaacaatattacatttgaattgaacaaagcaggaatagatcatacactctcctttctttgtaata
tgacacgcaagcctcatatccttaacaatgagagtattggattccttccctacagaagttcttacatccagaagcgtatc
aaggagaaggagaggttagagtatctgaatcctgaaatagctctggaggagaaaactaagggaaatgaattgttccagtc
tggtaaatatccagaagctaaaaagcactatgatgaggcaattaaaagaaaccctgatgatgccaagctttatagtaata
gagctgcatgttatactaaattaatggaatttaacctggctctcagagatgcagaagaatgtattagattagacccaaaa
tttattaaaggttatttaaggaaaggtggtatcttacaagcgatgaaggagccaacaaaagcatccgctgcataccagaa
agcattagatatagaccctaaatgtgacgaagcacaaaaaggatatagggaagctctgatggcggagggtagcgacccag
aggctgttaagaggcgtgctatggccgatccggaggtacaaaatatactgagtgatccagccatgcagcttatactacaa
caaatgcagaaagatcctaatgccgtgcgagaacatttgaaaaatccagaaattgccgcaaagatagagaaattattaga
atgtgggatcattgccattcgttga

Protein

Protein ID	pfu_aug1.0_38552.1_41081.t1
Definition	-
>pfu_aug1.0_38552.1_41081.t1 AIKEKESGNEAYKKKDFVTALQHYEKAIELDPNNITFELNKAGIDHTLSFLCNMTRKPHILNNESIGFLPYRSSYIQKRI KEKERLEYLNPEIALEEKTKGNELFQSGKYPEAKKHYDEAIKRNPDDAKLYSNRAACYTKLMEFNLALRDAEECIRLDPK FIKGYLRKGGILQAMKEPTKASAAYQKALDIDPKCDEAQKGYREALMAEGSDPEAVKRRAMADPEVQNILSDPAMQLILQ QMQKDPNAVREHLKNPEIAAKIEKLLECGIIAIR

Protein ID

pfu_aug1.0_38552.1_41081.t1

Definition

>pfu_aug1.0_38552.1_41081.t1
AIKEKESGNEAYKKKDFVTALQHYEKAIELDPNNITFELNKAGIDHTLSFLCNMTRKPHILNNESIGFLPYRSSYIQKRI
KEKERLEYLNPEIALEEKTKGNELFQSGKYPEAKKHYDEAIKRNPDDAKLYSNRAACYTKLMEFNLALRDAEECIRLDPK
FIKGYLRKGGILQAMKEPTKASAAYQKALDIDPKCDEAQKGYREALMAEGSDPEAVKRRAMADPEVQNILSDPAMQLILQ
QMQKDPNAVREHLKNPEIAAKIEKLLECGIIAIR

Genome browser

OIST Marine Genomics Unit since 2008