Gene
| Gene Model ID | pfu_aug1.0_3858.1_59339 |
|---|---|
| Locus | scaffold3858.1 : 15280 ... 33235 : - |
| To GenomeBrowser | scaffold3858.1:15280..33235 |
| Genes list of scaffold | scaffold3858.1 |
| Synonym | pfu_aug2.0_5170.1_02713 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3858.1_59339.t1 | 3 | 1 | FACT-Spt16_Nlob | 84 | 195 | 2.4e-33 | 114.9 | 4.9e-37 | 2.4e-33 | 114.9 |
| pfu_aug1.0_3858.1_59339.t1 | 3 | 1 | SPT16 | 116 | 138 | 0.0 | 186.6 | 0.5 | 2500.0 | -1.8 |
| pfu_aug1.0_3858.1_59339.t1 | 1 | 1 | Peptidase_M24 | 211 | 349 | 3.6e-08 | 33.2 | 1.2e-11 | 5.8e-08 | 32.5 |
| pfu_aug1.0_3858.1_59339.t1 | 3 | 2 | FACT-Spt16_Nlob | 228 | 263 | 2.4e-33 | 114.9 | 0.55 | 2700.0 | -2.3 |
| pfu_aug1.0_3858.1_59339.t1 | 3 | 2 | SPT16 | 314 | 369 | 0.0 | 186.6 | 0.17 | 820.0 | -0.3 |
| pfu_aug1.0_3858.1_59339.t1 | 3 | 3 | FACT-Spt16_Nlob | 320 | 354 | 2.4e-33 | 114.9 | 0.52 | 2600.0 | -2.2 |
| pfu_aug1.0_3858.1_59339.t1 | 3 | 3 | SPT16 | 378 | 538 | 0.0 | 186.6 | 0.0 | 0.0 | 186.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3858.1_59339.t1 | gi|340715630|ref|XP_003396313.1| | PREDICTED: FACT complex subunit spt16 isoform X1 [Bombus terrestris] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3858.1_59339.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3858.1_59339.t1 atgagagttttgaacagatcaatttcaatcggaataatttgccgacaaattttccgatttctgaaatctatacatgcaac agagtacattactatgggtattacacaacctgtcttttatggtgatatgataaacaaaataaaaaggatcaaaggtaggc agcataaccatcgaaaatgcgtcagaatcatcaaacgccttttacaccgtggatatgatcctaatgtcaccagacggaca ctaggcttgacatggctatttggatatgaattgacggacactgtgattgtactgtgtgagaagagcattaatatcttggc cagtaaaaagaaaatagagtttctgaaacaattggaatcaaccaaagaaaatgaccaaggtgtaccacagatcaaactgc tcaccagagataagggagacaaggacaaagcaaattttaagaagctcgtggatgccattaaagagagtaagaagggtaaa acgctcggagaatttcccaaagacaagtttccaggagaatttatggatggctggcgttcctctttgtcgggagaaggctt tactaagatggatttgagtgcatcaatggcatatataatggcaccaaaagaagaagcagaagttaaaaccatgcagaaag cctcaactgtaacgtgtgacgtcttcactaaatatctacgggaacaaatcatggaaatcatagacgcagagaagaaagtc aaacactctaagcttgccgatggcgtagatcaagcgttacaaaacaagaagtatgtgtcgggtgtagattcgtcacagct tgacatgtgttacccggctattatacagagtggtggaaaatacagcctcaaattcagcactgtcagtgatgacaccgttt tggattttgggacgataatttgtgctatgggagtgagatacaagtcatactgtgcaaacataactgagatgacggcggag gagaaacgacaacaacatcagaaagagttagcccagaaaataaacgaggatgctcgggaaagactgaaagggctcaagtc tggcactgaggataaaaaagttcgaaagtccaatgtttcttacaaatctctgtcacagttaccaaacgaatcggaagtaa aaaatttacagctttatgtcgacagaaaatatgaaaccattatcttgccaatatttggagtgcccacaccctttcacatt gcaactataaagaacataagtcagtcagttgagggggactacacatacctacgtatcaactttttccaccccggctcggc actcggcagaaatgaaggatcattattcccacaaccagatgctactttcctaaaagaaataacttacagaagttcaaaca ccaaagaaccaggggagatttcagctccctcctcaaatcttaacacggctttccgactcatcaaagaagtacagaaaaag ttcagaactcgagaggctgaggagagagagaaagagggtattgtgaaacaagacagcttggtaataaatcccaacagggg aaatcctaaactaaaggacttgtacatcagacctaatattgtgtccaaaaggatatcgggaacattagaggcccatgtaa atggtttccggtttacatcagtccgaggcgacaaagtagatattttatacaacaacatcaagaacgccttcttccagccg tgtgatggagaaatgatcattctcttacattttcatttgaagcacgccattttatttggtaaaaagaagcacatagacgt acagttctacactgaagtaggggagatcaccactgatctgggcaaacatcaacacatgcacgacagggatgatctacatg ctgagcaggctgaagcaaacaaacacgtcagtcttttacgacgtcataatcaacgttcgcacatgtacatgtag |
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Protein
| Protein ID | pfu_aug1.0_3858.1_59339.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3858.1_59339.t1 MRVLNRSISIGIICRQIFRFLKSIHATEYITMGITQPVFYGDMINKIKRIKGRQHNHRKCVRIIKRLLHRGYDPNVTRRT LGLTWLFGYELTDTVIVLCEKSINILASKKKIEFLKQLESTKENDQGVPQIKLLTRDKGDKDKANFKKLVDAIKESKKGK TLGEFPKDKFPGEFMDGWRSSLSGEGFTKMDLSASMAYIMAPKEEAEVKTMQKASTVTCDVFTKYLREQIMEIIDAEKKV KHSKLADGVDQALQNKKYVSGVDSSQLDMCYPAIIQSGGKYSLKFSTVSDDTVLDFGTIICAMGVRYKSYCANITEMTAE EKRQQHQKELAQKINEDARERLKGLKSGTEDKKVRKSNVSYKSLSQLPNESEVKNLQLYVDRKYETIILPIFGVPTPFHI ATIKNISQSVEGDYTYLRINFFHPGSALGRNEGSLFPQPDATFLKEITYRSSNTKEPGEISAPSSNLNTAFRLIKEVQKK FRTREAEEREKEGIVKQDSLVINPNRGNPKLKDLYIRPNIVSKRISGTLEAHVNGFRFTSVRGDKVDILYNNIKNAFFQP CDGEMIILLHFHLKHAILFGKKKHIDVQFYTEVGEITTDLGKHQHMHDRDDLHAEQAEANKHVSLLRRHNQRSHMYM |
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