Gene
| Gene Model ID | pfu_aug1.0_38623.1_26842 |
|---|---|
| Locus | scaffold38623.1 : 174 ... 12671 : + |
| To GenomeBrowser | scaffold38623.1:174..12671 |
| Genes list of scaffold | scaffold38623.1 |
| Synonym | NA |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | troponin-T |
| Description | Troponin-T partial sequence. BLASTP top hit to D88423 (Chlamys nipponensis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_38623.1_26842.t1 | 1 | 1 | Troponin | 8 | 91 | 1.0e-11 | 44.9 | 3.1e-15 | 1.1e-11 | 44.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_38623.1_26842.t1 | gi|1655496|dbj|BAA13610.1| | troponin T [Chlamys nipponensis] | 2.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-Dshape | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_38623.1_26842.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_38623.1_26842.t1 atggaggccgaagatggagagaaggaagtacagaagtccaaagagcagctggaggccgagaagagggccatactggccca aagaattaagccactgaccactgacggactggacactgccaagctggtggaaatggccaaagagcttcatcagaacatat tcagactaatgaatgaaaagtacgacatggaggagaaattcaaacgtcagcaatatgatatgatagagttggcagagaga gccagacaaatgaacaaaggaaaatccaggcgaggtgaagctagagttgatgaatcatataatcttttgaaatcaatatt gcataaacacagtgactcgtaa |
|
Protein
| Protein ID | pfu_aug1.0_38623.1_26842.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_38623.1_26842.t1 MEAEDGEKEVQKSKEQLEAEKRAILAQRIKPLTTDGLDTAKLVEMAKELHQNIFRLMNEKYDMEEKFKRQQYDMIELAER ARQMNKGKSRRGEARVDESYNLLKSILHKHSDS |
|