Gene
| Gene Model ID | pfu_aug1.0_3864.1_08752 |
|---|---|
| Locus | scaffold3864.1 : 18548 ... 27405 : - |
| To GenomeBrowser | scaffold3864.1:18548..27405 |
| Genes list of scaffold | scaffold3864.1 |
| Synonym | pfu_aug2.0_193.1_10411 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3864.1_08752.t1 | 4 | 1 | EF-hand_8 | 116 | 148 | 2.8e-10 | 39.6 | 0.11 | 120.0 | 2.4 |
| pfu_aug1.0_3864.1_08752.t1 | 2 | 1 | EF-hand_7 | 126 | 188 | 6.7e-15 | 54.9 | 1.5e-08 | 1.5e-05 | 24.9 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 1 | EF-hand_6 | 127 | 145 | 2.5e-11 | 42.4 | 0.029 | 31.0 | 4.8 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 1 | EF-hand_1 | 130 | 148 | 4.4e-08 | 31.8 | 0.14 | 150.0 | 2.0 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 2 | EF-hand_6 | 170 | 188 | 2.5e-11 | 42.4 | 0.00013 | 0.13 | 12.1 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 2 | EF-hand_8 | 170 | 187 | 2.8e-10 | 39.6 | 0.0014 | 1.5 | 8.5 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 2 | EF-hand_1 | 170 | 182 | 4.4e-08 | 31.8 | 0.0034 | 3.6 | 7.1 |
| pfu_aug1.0_3864.1_08752.t1 | 2 | 2 | EF-hand_7 | 216 | 291 | 6.7e-15 | 54.9 | 2.8e-10 | 2.9e-07 | 30.4 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 3 | EF-hand_6 | 216 | 241 | 2.5e-11 | 42.4 | 2.1e-05 | 0.023 | 14.5 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 3 | EF-hand_1 | 216 | 231 | 4.4e-08 | 31.8 | 0.00078 | 0.83 | 9.1 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 3 | EF-hand_8 | 217 | 232 | 2.8e-10 | 39.6 | 0.0063 | 6.7 | 6.4 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 4 | EF-hand_8 | 253 | 292 | 2.8e-10 | 39.6 | 2.2e-06 | 0.0024 | 17.4 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 4 | EF-hand_1 | 275 | 291 | 4.4e-08 | 31.8 | 0.0039 | 4.2 | 6.9 |
| pfu_aug1.0_3864.1_08752.t1 | 4 | 4 | EF-hand_6 | 277 | 291 | 2.5e-11 | 42.4 | 0.02 | 21.0 | 5.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3864.1_08752.t1 | gi|260809435|ref|XP_002599511.1| | hypothetical protein BRAFLDRAFT_80978 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3864.1_08752.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3864.1_08752.t1 atgaagatttctgatcatgaagttctctctgagttggcgaggaatactcaagcgacaaaatttcgaataagacgcgagtc tacggctcccgaaatccgcatcacgcgtgacaccgacaaaatactgaaaccaccgttcaaccaggaccaagatcttgtat gcagtgggtgtgataaggcaatggatccattcaaggacacttggtatccatgtcgtgcgtgtagtcgtgtgttccataaa gaatgtgtcaaaaaactcaaatctgtgcacaaatctgtgtttgaaacattggaacgggcaaacacaaacacgggatggag ctgtcatatatgtgacgacctaagcttactactcaacgaagaagaattgaactcgatcctagaaaagtttgagcgtatag cacagaatagagattcgcggatatccttagacgattacatagcatacaatacgaagatctcagaggaacccttgacacaa gatgacgtcaaacgtttatcgttgcaattcaagttgatggatctcgataaaaataattacatagagtggtgggagttctt aaaccatgaagctaagatcaaactcggttgtcgcagtgaaggcgagttagtgtctatgttatcagaaaaggaagtcatta tggccaaatcagtattccggaccttggacgagaatcacgacggatctgtgacagaatgggaggcgagaaggatctacaaa agctggtacagacgatttgacgacaagaaagacaaactcggcatggaaagagaaagtacaagtctagaacttcacgcaga gagtgcaacgcgtttggtgatggaaagtgacacaagtaaatcgggggtagtgtcatgggaggactttttagctggccagg ctttgtacattattagtgctcgaccgaacctcacgatacaactttga |
|
Protein
| Protein ID | pfu_aug1.0_3864.1_08752.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3864.1_08752.t1 MKISDHEVLSELARNTQATKFRIRRESTAPEIRITRDTDKILKPPFNQDQDLVCSGCDKAMDPFKDTWYPCRACSRVFHK ECVKKLKSVHKSVFETLERANTNTGWSCHICDDLSLLLNEEELNSILEKFERIAQNRDSRISLDDYIAYNTKISEEPLTQ DDVKRLSLQFKLMDLDKNNYIEWWEFLNHEAKIKLGCRSEGELVSMLSEKEVIMAKSVFRTLDENHDGSVTEWEARRIYK SWYRRFDDKKDKLGMERESTSLELHAESATRLVMESDTSKSGVVSWEDFLAGQALYIISARPNLTIQL |
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