Gene
| Gene Model ID | pfu_aug1.0_3871.1_52110 |
|---|---|
| Locus | scaffold3871.1 : 19599 ... 32145 : - |
| To GenomeBrowser | scaffold3871.1:19599..32145 |
| Genes list of scaffold | scaffold3871.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3871.1_52110.t1 | 2 | 1 | PDZ | 106 | 140 | 8.0e-19 | 67.6 | 1.3e-06 | 0.0063 | 16.6 |
| pfu_aug1.0_3871.1_52110.t1 | 2 | 1 | PDZ_2 | 106 | 129 | 2.2e-10 | 40.2 | 0.0033 | 16.0 | 5.4 |
| pfu_aug1.0_3871.1_52110.t1 | 2 | 2 | PDZ | 252 | 323 | 8.0e-19 | 67.6 | 1.2e-16 | 5.9e-13 | 48.8 |
| pfu_aug1.0_3871.1_52110.t1 | 2 | 2 | PDZ_2 | 263 | 337 | 2.2e-10 | 40.2 | 1.3e-11 | 6.5e-08 | 32.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3871.1_52110.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3871.1_52110.t1 atgtccgtgtataaagaaacgattatatttcataggagtgataaatacgtcaacgtcattcaatgaatgactcttattgc tctggcactgactattgattctctagttatggctcttgttgcactaatactgactcttgttgcactagaactggcttttg ttgttctagtactgacatttgttgctctagaactgactctttttactctggtattgactctttttgcactagtactgact cttgttgcactggtactgactcttgttgcactggtactgactcttgttgctctggtactgactcttaattgttgcactgg cgatgagatcatacagttgaatggtcagcagatgagaggactgacccacagtgaagctctggccaaatttcgccagttga agaaaggccctgtaaccatagtattctgtaggaaaaccaggtcaagggcatcaagcccatcagtgagattagccaaaacc tcctcagcggacttctcctcagagggtagtccagtgtccactcctggtcactctccctatggtagctgttctgacttgac cacactagatgaccatgaggatcccataaatacaataaactgtatatctacctcaagcagctatgacaattttcttgatg tcaatcagacagtttctccagtgcaatttgaatcttccgaaagtgcaattttggatgttagtgctagtgctggtgaaagg ccaaaactttcacagaaagaggaatctgactacgaaataacactagaaaaagagcttggtattgggttgggaatttctct gataagaaaggatactgctggtatcagccacatctatatccaggatatataccatggttctcctgcagacaaggatggga gactacacaagggtgatatgataaccgaggtgaatgggaaaaccatgcaggggttatctctcttagatgcgtaccagtac ttcagaaatttacaacctggatctgttaacattgttgtgaaaaggaaaagagattttctggatgacgataatgaaaacta ttaa |
|
Protein
| Protein ID | pfu_aug1.0_3871.1_52110.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3871.1_52110.t1 MSVYKETIIFHRSDKYVNVIQXMTLIALALTIDSLVMALVALILTLVALELAFVVLVLTFVALELTLFTLVLTLFALVLT LVALVLTLVALVLTLVALVLTLNCCTGDEIIQLNGQQMRGLTHSEALAKFRQLKKGPVTIVFCRKTRSRASSPSVRLAKT SSADFSSEGSPVSTPGHSPYGSCSDLTTLDDHEDPINTINCISTSSSYDNFLDVNQTVSPVQFESSESAILDVSASAGER PKLSQKEESDYEITLEKELGIGLGISLIRKDTAGISHIYIQDIYHGSPADKDGRLHKGDMITEVNGKTMQGLSLLDAYQY FRNLQPGSVNIVVKRKRDFLDDDNENY |
|