Gene
| Gene Model ID | pfu_aug1.0_39218.1_12365 |
|---|---|
| Locus | scaffold39218.1 : 1 ... 5761 : - |
| To GenomeBrowser | scaffold39218.1:1..5761 |
| Genes list of scaffold | scaffold39218.1 |
| Synonym | pfu_aug2.0_85.1_16879 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_39218.1_12365.t1 | 7 | 1 | WD40 | 83 | 121 | 0.0 | 169.4 | 3.3e-12 | 1.2e-08 | 34.4 |
| pfu_aug1.0_39218.1_12365.t1 | 7 | 2 | WD40 | 126 | 163 | 0.0 | 169.4 | 3.6e-12 | 1.3e-08 | 34.3 |
| pfu_aug1.0_39218.1_12365.t1 | 7 | 3 | WD40 | 169 | 205 | 0.0 | 169.4 | 2.0e-11 | 7.3e-08 | 32.0 |
| pfu_aug1.0_39218.1_12365.t1 | 7 | 4 | WD40 | 224 | 239 | 0.0 | 169.4 | 2.1e-07 | 0.0008 | 19.2 |
| pfu_aug1.0_39218.1_12365.t1 | 7 | 5 | WD40 | 247 | 276 | 0.0 | 169.4 | 1.4e-06 | 0.0052 | 16.6 |
| pfu_aug1.0_39218.1_12365.t1 | 7 | 6 | WD40 | 285 | 321 | 0.0 | 169.4 | 5.2e-09 | 1.9e-05 | 24.3 |
| pfu_aug1.0_39218.1_12365.t1 | 7 | 7 | WD40 | 343 | 371 | 0.0 | 169.4 | 2.8e-05 | 0.1 | 12.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_39218.1_12365.t1 | gi|82524659|ref|NP_001032331.1| | pleiotropic regulator 1 [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 3 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_39218.1_12365.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39218.1_12365.t1 gtatccagctttctgatggtaccatgatgcagtcagatcctagccaagctggagcaatggagatgatgttgtatgaccat agcaggaacatggagattccgtcaggagcaagtgtaaatgatatacgacaaaatgctggagcatcagaaagggtggatcc atctagtgctcttgttaccattggtcaacaacaagcacttgttcctaaaaaagcacccacaatgccaaagccatcatggc atccaccttggaagttatatagggtgataagtggccatttaggctgggttagatgtatagctgtagaaccaggaaatgaa tggtttgtgactggtgctggtgatagagttattaagatctgggatcttgcaagtggtaccttgaagttatcccttactgg ccatgtgagcacagtaaggggtgtagtagtcagtccaagacagccctacctattctcatgtggtgaggataaaatggtca gatgttgggacctggaatataataagactatcaggcattatcatggtcacctgagtgcttgttattcaatagatctccac cctaccatagatgtcctgtgtacatgtggacgtgacggtacagcacgcgtgtgggacatacgtaccaaagcatgtgtaca ntcaggtgtcaggcagcagaaccacagaaaaaataaagtgatcacagggagtcatgattgtaccataagattatgggatt tagctgccggcagatcacgtgttacactcacaaatcataaaaagagtgtcagagctctaactcttcatccaaaacagtac acatttgcatcagcttctcctgataatgtaaaacaatggaagtttccagacggtaacttcatacagaatctgtcgggaca taacgctataattaatgccctagcctgcaatcctgatggtgttctagtgtctggagctgataatggatccatgtttatgt gggactggaggacaggatataactttcagcgtgtccaggcagcagcacaacctggatctatagattcggagtcgggaata tttgctatgacgtttgatgtcagtggaagtcgactgttgacagcagaggccgacaaaaccatcaaaatatacaaggagga tgaatcagctactgaagaaactcaccccatcaactggagaccagatattgtgaagaagaagaggtactga |
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Protein
| Protein ID | pfu_aug1.0_39218.1_12365.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39218.1_12365.t1 IQLSDGTMMQSDPSQAGAMEMMLYDHSRNMEIPSGASVNDIRQNAGASERVDPSSALVTIGQQQALVPKKAPTMPKPSWH PPWKLYRVISGHLGWVRCIAVEPGNEWFVTGAGDRVIKIWDLASGTLKLSLTGHVSTVRGVVVSPRQPYLFSCGEDKMVR CWDLEYNKTIRHYHGHLSACYSIDLHPTIDVLCTCGRDGTARVWDIRTKACVXSGVRQQNHRKNKVITGSHDCTIRLWDL AAGRSRVTLTNHKKSVRALTLHPKQYTFASASPDNVKQWKFPDGNFIQNLSGHNAIINALACNPDGVLVSGADNGSMFMW DWRTGYNFQRVQAAAQPGSIDSESGIFAMTFDVSGSRLLTAEADKTIKIYKEDESATEETHPINWRPDIVKKKRY |
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