Gene
| Gene Model ID | pfu_aug1.0_3926.1_08770 |
|---|---|
| Locus | scaffold3926.1 : 42708 ... 50925 : - |
| To GenomeBrowser | scaffold3926.1:42708..50925 |
| Genes list of scaffold | scaffold3926.1 |
| Synonym | pfu_aug2.0_443.1_10777 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3926.1_08770.t1 | 2 | 1 | HR1 | 4 | 16 | 7.7e-06 | 25.5 | 0.26 | 3800.0 | -2.3 |
| pfu_aug1.0_3926.1_08770.t1 | 2 | 2 | HR1 | 61 | 116 | 7.7e-06 | 25.5 | 5.2e-10 | 7.7e-06 | 25.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3926.1_08770.t1 | gi|260809260|ref|XP_002599424.1| | hypothetical protein BRAFLDRAFT_287730 [Branchiostoma floridae] | 1.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3926.1_08770.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3926.1_08770.t1 atgcgcaaagacacactgcgtggtactttacggagacgaatgtcgatgacaataatgaaaaagaagatgaggacatttca ggattattctttgccttataattctaactttggttacatcgataaattagctgttggtttaggagtggggcagttgttca acccttggattttaaaggaccatgacctgcagcaaaagatcgatcatgagattaagatgcgggaagggacggccaaactt ttggcggcgtcaaagcaccccgcccagatgatagaggccgctaagaaccttctcacctctaacacaagaataatggcata catgacagaactacaaaaacgtaaaacggcggaggtccttggcagaaatacgtaa |
|
Protein
| Protein ID | pfu_aug1.0_3926.1_08770.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3926.1_08770.t1 MRKDTLRGTLRRRMSMTIMKKKMRTFQDYSLPYNSNFGYIDKLAVGLGVGQLFNPWILKDHDLQQKIDHEIKMREGTAKL LAASKHPAQMIEAAKNLLTSNTRIMAYMTELQKRKTAEVLGRNT |
|