Gene
| Gene Model ID | pfu_aug1.0_39304.1_19717 |
|---|---|
| Locus | scaffold39304.1 : 1 ... 10728 : + |
| To GenomeBrowser | scaffold39304.1:1..10728 |
| Genes list of scaffold | scaffold39304.1 |
| Synonym | pfu_aug2.0_4.1_13340 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_39304.1_19717.t1 | 2 | 1 | DNA_primase_lrg | 68 | 223 | 0.0 | 196.4 | 0.0 | 1.69978e-42 | 145.5 |
| pfu_aug1.0_39304.1_19717.t1 | 2 | 2 | DNA_primase_lrg | 226 | 297 | 0.0 | 196.4 | 1.2e-17 | 1.8e-13 | 50.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_39304.1_19717.t1 | gi|291240166|ref|XP_002739991.1| | PREDICTED: DNA primase large subunit-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_39304.1_19717.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39304.1_19717.t1 ggaggagctgaaacgctggtttttacaacaagaattggattttttcaaattccgatttaacaacttaacaatagatcaaa aacaagaattcctgttagcgaacagtttggactacaaaccaatttcagatgaagagaaatcgtgcattctcagtgacctt atggcagccggaggtaggaatgccgcaaccatggacacacaggaattcttcaaggtgcccttcacggaagtatttgactt gattcagcgtcggagggtgttcctgagtagaggatatgcttttgtacccagagatgatcttgtatctatagtcatcactc actacagaactcaactctcacatgctttagctatgacttcacgagcgttacctcatcttgaagaagacaacagactgctg ccgatgttatctggtctcagtaagcggtacttaggagaggattatgggacaaagaagaataatgccggtcaagtgacggc cgatatgattgatatgctttcccggcagtcttttcctctatgcatgcagcagctacatcaagcatgtcgtcgtgaccatc acttacggcacgggggtcgacagcagtatggactcttccttaaaggtataggactgtcactggaggaagccatgaagttc tggaaaactgaattcatgaaaatgatggatggggataagctaactgattgttgcccattcagacacacagatgttgatct tctggcacagaaattaagactggctaacattggaaaagatcatgtggaaaaggcaatatcctttgtgaaaggaggtcact accagcttgcctgtaaaagttattttgaagccacccacccacccctacctgatggagaggacattagtataaaccatcct aatcaatactttgatgaaagtcgaagggtcctcagtggagagaaaaaggaaggatccagactgtcccagccccctagaac tcctgcctctaagtctacccagccatcacagaacactccccagtcacagtccagtaaccctacccagactcaaggtgcac catcgtcacagatcagcgaactcggggaaatggaagacgatgatgacctactggcaagcatggaaacttag |
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Protein
| Protein ID | pfu_aug1.0_39304.1_19717.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39304.1_19717.t1 EELKRWFLQQELDFFKFRFNNLTIDQKQEFLLANSLDYKPISDEEKSCILSDLMAAGGRNAATMDTQEFFKVPFTEVFDL IQRRRVFLSRGYAFVPRDDLVSIVITHYRTQLSHALAMTSRALPHLEEDNRLLPMLSGLSKRYLGEDYGTKKNNAGQVTA DMIDMLSRQSFPLCMQQLHQACRRDHHLRHGGRQQYGLFLKGIGLSLEEAMKFWKTEFMKMMDGDKLTDCCPFRHTDVDL LAQKLRLANIGKDHVEKAISFVKGGHYQLACKSYFEATHPPLPDGEDISINHPNQYFDESRRVLSGEKKEGSRLSQPPRT PASKSTQPSQNTPQSQSSNPTQTQGAPSSQISELGEMEDDDDLLASMET |
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