Gene
| Gene Model ID | pfu_aug1.0_39355.1_05073 |
|---|---|
| Locus | scaffold39355.1 : 1 ... 13739 : + |
| To GenomeBrowser | scaffold39355.1:1..13739 |
| Genes list of scaffold | scaffold39355.1 |
| Synonym | pfu_aug2.0_439.1_30757 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_39355.1_05073.t1 | 3 | 1 | Helicase_C_3 | 2 | 79 | 5.7e-19 | 68.1 | 2.1e-21 | 1.5e-17 | 63.5 |
| pfu_aug1.0_39355.1_05073.t1 | 3 | 2 | Helicase_C_3 | 233 | 257 | 5.7e-19 | 68.1 | 0.042 | 310.0 | 1.1 |
| pfu_aug1.0_39355.1_05073.t1 | 1 | 1 | Helicase_C | 296 | 364 | 9.3e-11 | 41.4 | 2.8e-14 | 2.0e-10 | 40.3 |
| pfu_aug1.0_39355.1_05073.t1 | 3 | 3 | Helicase_C_3 | 308 | 331 | 5.7e-19 | 68.1 | 0.61 | 4500.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_39355.1_05073.t1 | gi|114050909|ref|NP_001039453.1| | TFIIH basal transcription factor complex helicase XPB subunit [Bos taurus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_39355.1_05073.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39355.1_05073.t1 gctccaaatggacacatttttctggaatcgttttctccggtatataaacatgcacatgattttctgattgcaatttccga gccagtatgtagacctgagttcatacatgagtacaaattgacggcatactcactgtacgctgcagtgtcggtcggcttgg aaacaggggacatcatagagtacttacgcaggctaagtaagacaactcttccatccggtattgaagaattcatcaaggtt aacaaacctgcaacagccaatcaggagccaaagccaggcacttcttcaggggaggtcactgaggaaactcccggagaaac agctgtaccagaggacatacatgctttctacgataaaatggataaagaagaagaagaaggggaagatctcaaaactgtct catttgaagtgaagcaagagagcatagaagtcattcaaaaaagttatcatcgatttgaaaatgttcatagtacataggtc cagaccattccggccaagatgtttcggcgagtattgaccatcgtaaatgcccactgtaaattgggactgaccgctacact ggtcagggaagatgacaaaatagccgatctgaactttctgatcggtccaaaattatatgaagccaactggatggagcttc agaataaaggattcattgccagagtccaatgtgccgaggtatggtgtccaatggccccagaattctacagagagtatctg gcaacaaagtccatcaagaaactgctgctggctgttgtgaatccaaacaaattccgagcatgccaatttctgatccgata ccatgagagacggaatgataaaataatcgtattctctgacaatgtatttgccctgaaaagctatgctataaggctgaaca aaccgtatttatatggtcccacatcccagggagaaaggatgcagattcttcagaatttccagcataatccgagagttaat actatctttgtatccaaggttgcagacacatcctttgatttgccggaagctaatgtactgatccagatctcagctcatgg tggatccaggaggcaagaagctcaaagactcggcagaattctcagggccaagaaaggtgctgttgccgaggaatacaacg cctttttctactcgttggtgtcacaggatacgcaggaaatgcactattccctaaaacgacaacggtttctggtaaaccaa ggctatgcctacaaagtcatcaccaaactagcgggaatggaacaggaggacctagcatacagtactaaggaagaacagct acaattactacaaaaagtattagcggccacggaacaagacgcagaggaggaatatgcagccggagattccggaggttcaa aggtcagtagaaaagttggcagcatgagttcaatgtctggggctgatgacaacctatacatggagttcagaaataagaaa tctgctgcgaacgccagtcatcttcatccattgttcaagaagttcagacagtga |
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Protein
| Protein ID | pfu_aug1.0_39355.1_05073.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39355.1_05073.t1 APNGHIFLESFSPVYKHAHDFLIAISEPVCRPEFIHEYKLTAYSLYAAVSVGLETGDIIEYLRRLSKTTLPSGIEEFIKV NKPATANQEPKPGTSSGEVTEETPGETAVPEDIHAFYDKMDKEEEEGEDLKTVSFEVKQESIEVIQKSYHRFENVHSTXV QTIPAKMFRRVLTIVNAHCKLGLTATLVREDDKIADLNFLIGPKLYEANWMELQNKGFIARVQCAEVWCPMAPEFYREYL ATKSIKKLLLAVVNPNKFRACQFLIRYHERRNDKIIVFSDNVFALKSYAIRLNKPYLYGPTSQGERMQILQNFQHNPRVN TIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGRILRAKKGAVAEEYNAFFYSLVSQDTQEMHYSLKRQRFLVNQ GYAYKVITKLAGMEQEDLAYSTKEEQLQLLQKVLAATEQDAEEEYAAGDSGGSKVSRKVGSMSSMSGADDNLYMEFRNKK SAANASHLHPLFKKFRQ |
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