Gene
| Gene Model ID | pfu_aug1.0_39476.1_12374 |
|---|---|
| Locus | scaffold39476.1 : 2150 ... 5661 : - |
| To GenomeBrowser | scaffold39476.1:2150..5661 |
| Genes list of scaffold | scaffold39476.1 |
| Synonym | pfu_aug2.0_101.1_03628 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_39476.1_12374.t1 | 1 | 1 | Methyltransf_8 | 3 | 189 | 0.0 | 249.3 | 0.0 | 0.0 | 249.1 |
| pfu_aug1.0_39476.1_12374.t1 | 2 | 1 | Methyltransf_11 | 38 | 82 | 4.5e-07 | 30.2 | 0.00029 | 0.73 | 10.3 |
| pfu_aug1.0_39476.1_12374.t1 | 2 | 2 | Methyltransf_11 | 80 | 125 | 4.5e-07 | 30.2 | 3.9e-07 | 0.00097 | 19.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_39476.1_12374.t1 | gi|260806621|ref|XP_002598182.1| | hypothetical protein BRAFLDRAFT_204639 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_39476.1_12374.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39476.1_12374.t1 gatttggcaatggaaatgttcaagaaagaccgggagtcatatttggtataccacgagggtttccagacgcaagtggcaaa gtggccgacaaatcctgtagatgttatcatagaggagctcaaaaaatgcaaccaaaggactgtgattgcagattttggat gtggggatgctaagattgctcgtagtctgccgttgaaagttcattcctttgactttgtggctatcaataagtatgttaca gcctgtaacatggccaaagttcccttatcaaacagtacagtagatgtagccgttttctgtctgtcattgatgggtaccaa ccttaaagactacctgacagaagccaatagagtactcaagaaaaatggtactatgaaggtggcagaggttagcagtagat ttaacagtgtccctagatttcttcttactgtggagaagtttggtttcaagctcacctctcaggatgacagcaacaagatg tttatcatgttgaactttaagaagactggactcccaaagacaggtgccccggatttcaaactccacccatgtgtttacaa gaaaagataa |
|
Protein
| Protein ID | pfu_aug1.0_39476.1_12374.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39476.1_12374.t1 DLAMEMFKKDRESYLVYHEGFQTQVAKWPTNPVDVIIEELKKCNQRTVIADFGCGDAKIARSLPLKVHSFDFVAINKYVT ACNMAKVPLSNSTVDVAVFCLSLMGTNLKDYLTEANRVLKKNGTMKVAEVSSRFNSVPRFLLTVEKFGFKLTSQDDSNKM FIMLNFKKTGLPKTGAPDFKLHPCVYKKR |
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