Gene
| Gene Model ID | pfu_aug1.0_3949.1_08773 |
|---|---|
| Locus | scaffold3949.1 : 13986 ... 27284 : + |
| To GenomeBrowser | scaffold3949.1:13986..27284 |
| Genes list of scaffold | scaffold3949.1 |
| Synonym | pfu_aug2.0_269.1_30532 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3949.1_08773.t1 | 3 | 1 | PDZ_2 | 93 | 137 | 1.4e-17 | 63.2 | 2.6e-05 | 0.13 | 12.2 |
| pfu_aug1.0_3949.1_08773.t1 | 3 | 1 | PDZ | 102 | 158 | 5.2e-39 | 132.2 | 2.2e-13 | 1.1e-09 | 38.3 |
| pfu_aug1.0_3949.1_08773.t1 | 3 | 2 | PDZ | 182 | 250 | 5.2e-39 | 132.2 | 1.5e-14 | 7.5e-11 | 42.0 |
| pfu_aug1.0_3949.1_08773.t1 | 3 | 2 | PDZ_2 | 183 | 256 | 1.4e-17 | 63.2 | 1.2e-09 | 6.1e-06 | 26.0 |
| pfu_aug1.0_3949.1_08773.t1 | 3 | 3 | PDZ | 269 | 346 | 5.2e-39 | 132.2 | 1.7e-17 | 8.5e-14 | 51.5 |
| pfu_aug1.0_3949.1_08773.t1 | 3 | 3 | PDZ_2 | 278 | 355 | 1.4e-17 | 63.2 | 2.0e-08 | 0.0001 | 22.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3949.1_08773.t1 | gi|348521332|ref|XP_003448180.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_3949.1_08773.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3949.1_08773.t1 atgtcgtctgctgcttcctttcctgctctaccctcctccctatccactcctttaggactagccaataataaggccatggg gtctactatatcttcagctccttttggttccaacaccctgcgcaggtcaggacgcaagtctgccatgtacgtggtcgaca ggaagcagtcatcctgtatgtccatttcctcgacggctacgtcagtgatggtcaataaccaggtatgtcacagtgagacg gtagatgtaccgttagtgggtgacagtcgtgggataggcctgatcatagacagcagtatgggggagtgtctggttgtgtc ggcaatcgtccctggtggagtagctgaaaggtgtggtgttatacaagagggggatcgtatagtgtcatacaatggacagg acgtatataacatgttagcggaggatgtcaacaagtggttacgggaacctcgacaaagatgtgagctacaaatagaattt gatgtcactgaatctgtcatgcccagctctggagtgttcatagtcaaactgcctaactacccaaaggacataggattgtc tatcaatgttacgagaaaccatgatctgacaattacaaacgtgaagaaaggcagtatagcatacaggtgtggatccctac agaggggagataagatactagctatcggtgaccacgataccgagggtctgtcactggatgaagccatgctcctactacaa tctgctgaggatatcatcaagctaaagctgagacgagaggaaaaagagagtgatgagataaatgatgatagtacagtgta cactgtagaactgcaaagacgtggcggccccctcggtattacaatatcagggacagataacccaggagatcccattgtaa tttctgatatcattccaaaaggcctagcagacagaactggtgccattcatataggagatttactactggctataaataac atgtctacgaaaggtagaacattaacggaggcaactgtcatgctgcagaatgccggggatctagtcaacctcaaaatagc cagacctcaggaactatcgagtgtccattttgtcctcattttgtcagattctgttcgtggcctgagtctactggacatca ttggacacctagcggatatcaatgaacacatagcagacagttaccggagttgtatcgaagagtaa |
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Protein
| Protein ID | pfu_aug1.0_3949.1_08773.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3949.1_08773.t1 MSSAASFPALPSSLSTPLGLANNKAMGSTISSAPFGSNTLRRSGRKSAMYVVDRKQSSCMSISSTATSVMVNNQVCHSET VDVPLVGDSRGIGLIIDSSMGECLVVSAIVPGGVAERCGVIQEGDRIVSYNGQDVYNMLAEDVNKWLREPRQRCELQIEF DVTESVMPSSGVFIVKLPNYPKDIGLSINVTRNHDLTITNVKKGSIAYRCGSLQRGDKILAIGDHDTEGLSLDEAMLLLQ SAEDIIKLKLRREEKESDEINDDSTVYTVELQRRGGPLGITISGTDNPGDPIVISDIIPKGLADRTGAIHIGDLLLAINN MSTKGRTLTEATVMLQNAGDLVNLKIARPQELSSVHFVLILSDSVRGLSLLDIIGHLADINEHIADSYRSCIEE |
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