Gene
| Gene Model ID | pfu_aug1.0_3950.1_30572 |
|---|---|
| Locus | scaffold3950.1 : 22136 ... 28643 : + |
| To GenomeBrowser | scaffold3950.1:22136..28643 |
| Genes list of scaffold | scaffold3950.1 |
| Synonym | pfu_aug2.0_1423.1_11654 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | shematrin-5 |
| Description | reciprocal BLASTN hit to NCBI Accession AB244423 |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3950.1_30572.t1 | gi|93102307|dbj|BAE93437.1| | shematrin-5 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 2 |
| mantlePallium | 2 |
Transcript
| Transcript ID | pfu_aug1.0_3950.1_30572.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3950.1_30572.t1 atgaagttcgtaacggaattagttttgttaggattattgtgtaatatttgctggtgtcagatacagagacagagaattac atgggatggtgattgcggcgatgacgacagggatgggtacgatgactgttcacaaaatgttggcgaagatgccgatcgcg atggtcgagacgactacactggtgaatgtgctgacttcgatcgcgatggatctgacgattgtttcgatgacatggatgat gcccaaggtgcatatattagtccatacttgtacagaagaagatttggtcttggtcgattcggtcttggccggtttgggct tgggcggtttggtttaggaaatcccttcatgcagaaccgacaatttggatatggtcctattggtggtatgaatttccgtc ttggtggattaggttatccgtatggaagactgggactaggatatggaaatctactatctagatacggaggatatggcaat attttaggaggatatggaaatttgaggggacttggaggatatgggaaccttcttggaggatatggatctctgagaggata tgggaacgtaggtgggtatagaggactcggtgaatacggaaatctttatggaggactgggaggatatggaagtattcgag gattagggaatttaggaggatatggttacctaggaggatataggaaccttggaggatatggaaattacggattaagacca tatggagacaactatggacgatatggtgtcggaagttaccttcgcagaaataggaggaagaagtactaa |
|
Protein
| Protein ID | pfu_aug1.0_3950.1_30572.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3950.1_30572.t1 MKFVTELVLLGLLCNICWCQIQRQRITWDGDCGDDDRDGYDDCSQNVGEDADRDGRDDYTGECADFDRDGSDDCFDDMDD AQGAYISPYLYRRRFGLGRFGLGRFGLGRFGLGNPFMQNRQFGYGPIGGMNFRLGGLGYPYGRLGLGYGNLLSRYGGYGN ILGGYGNLRGLGGYGNLLGGYGSLRGYGNVGGYRGLGEYGNLYGGLGGYGSIRGLGNLGGYGYLGGYRNLGGYGNYGLRP YGDNYGRYGVGSYLRRNRRKKY |
|