Gene
| Gene Model ID | pfu_aug1.0_39538.1_48361 |
|---|---|
| Locus | scaffold39538.1 : 2796 ... 5539 : + |
| To GenomeBrowser | scaffold39538.1:2796..5539 |
| Genes list of scaffold | scaffold39538.1 |
| Synonym | pfu_aug2.0_1258.1_28162 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_39538.1_48361.t1 | 2 | 1 | CDT1 | 190 | 230 | 3.1e-13 | 49.9 | 0.28 | 1000.0 | -0.5 |
| pfu_aug1.0_39538.1_48361.t1 | 2 | 2 | CDT1 | 365 | 408 | 3.1e-13 | 49.9 | 8.3e-17 | 3.1e-13 | 49.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_39538.1_48361.t1 | gi|344237972|gb|EGV94075.1| | DNA replication factor Cdt1 [Cricetulus griseus] | 1.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_39538.1_48361.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39538.1_48361.t1 atggcacaagcgagagtgacagagtttttctctgccaaaaaacgcacgtttgatgcacaaccatcaaagagaaggaaatt agcaagtacaaatcaagatgctgaagtttttaatacagtcgatgttaacgtgagagccacgcgatcgtctctgcgcataa aaaatgatgtcgccccacgcgctgaaaatgcgccccaacagacgcgatcatcgacaccaaaaccggctgaaaagcctggt agaaaaccgagagcaaagccaaccaaaggtaaacagatgaaaggccagtctaaaatcaaagatgcttttgagattgtaga agcaaattcgaggcccgcctctccagaccatgagcagataactcctaaaccaaaccttgatcaaatagtcccaactgagg aagttacttcagcttgggatgaacatgacggtccccttacacctagtaaacgacaaaatgaacagaccagttccgactca gagggggaaatcctctcccggaaacggaggcgaagaggaacaacgaaagaggtggaaaagacaccattgaaaaatgcacc cacgccgcaacgaaaatcgagaaagaagcttcaaatgagacccaatgtcatacagtctagtgacagtgacgaacaagagc aagaggttgaacatcctatttctgagaaatcagaatttagacaagcgttatccatacaacaaaccccacctgctatcccc cccttaccagatacaccagaagtcgttagaagacaggcaacaaagggtccagatgtacctacatctgccaaggtcaaggc cgccatggaacagctagagcaactcaaagctggcaagacaaagaagttgaaccaagaagctgttaaggagaagctgtcta aagtcactaatctacaggacttgaaggctcagctagcagaaatgaagcagaccaaggcccagctgaagaaacctctgcca tctccgatcaaaactgaagtatctgacgtcaaagtcaagactgaagaaataacaagcgaaccctgtgagaagaaagctcc agcctatgagagattccacaccctggcagctccagccccgcccattttagccctaccctataaatacaaactgctggctg acatgttcaggggaatggacacagtggtcagtatgctccataatcggtcagaggtttgctcattctctaagctcaaggcc gcagtccaggaaatgaccaaaaggtaa |
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Protein
| Protein ID | pfu_aug1.0_39538.1_48361.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39538.1_48361.t1 MAQARVTEFFSAKKRTFDAQPSKRRKLASTNQDAEVFNTVDVNVRATRSSLRIKNDVAPRAENAPQQTRSSTPKPAEKPG RKPRAKPTKGKQMKGQSKIKDAFEIVEANSRPASPDHEQITPKPNLDQIVPTEEVTSAWDEHDGPLTPSKRQNEQTSSDS EGEILSRKRRRRGTTKEVEKTPLKNAPTPQRKSRKKLQMRPNVIQSSDSDEQEQEVEHPISEKSEFRQALSIQQTPPAIP PLPDTPEVVRRQATKGPDVPTSAKVKAAMEQLEQLKAGKTKKLNQEAVKEKLSKVTNLQDLKAQLAEMKQTKAQLKKPLP SPIKTEVSDVKVKTEEITSEPCEKKAPAYERFHTLAAPAPPILALPYKYKLLADMFRGMDTVVSMLHNRSEVCSFSKLKA AVQEMTKR |
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