Gene
| Gene Model ID | pfu_aug1.0_396.1_65384 |
|---|---|
| Locus | scaffold396.1 : 7436 ... 17195 : + |
| To GenomeBrowser | scaffold396.1:7436..17195 |
| Genes list of scaffold | scaffold396.1 |
| Synonym | pfu_aug2.0_1557.1_24997 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_396.1_65384.t1 | 1 | 1 | SRPRB | 9 | 131 | 8.7e-11 | 41.3 | 6.2e-14 | 1.1e-10 | 40.9 |
| pfu_aug1.0_396.1_65384.t1 | 1 | 1 | Gtr1_RagA | 9 | 117 | 1.1e-07 | 31.2 | 7.3e-11 | 1.4e-07 | 30.9 |
| pfu_aug1.0_396.1_65384.t1 | 1 | 1 | MMR_HSR1 | 10 | 97 | 6.4e-06 | 26.1 | 8.6e-09 | 1.6e-05 | 24.8 |
| pfu_aug1.0_396.1_65384.t1 | 1 | 1 | Arf | 11 | 164 | 0.0 | 219.9 | 0.0 | 0.0 | 219.7 |
| pfu_aug1.0_396.1_65384.t1 | 1 | 1 | Ras | 11 | 164 | 2.0e-09 | 37.0 | 1.2e-12 | 2.3e-09 | 36.8 |
| pfu_aug1.0_396.1_65384.t1 | 2 | 1 | G-alpha | 11 | 25 | 4.1e-07 | 29.0 | 0.049 | 91.0 | 1.5 |
| pfu_aug1.0_396.1_65384.t1 | 1 | 1 | Miro | 11 | 116 | 6.3e-07 | 29.9 | 4.6e-10 | 8.5e-07 | 29.4 |
| pfu_aug1.0_396.1_65384.t1 | 2 | 2 | G-alpha | 35 | 81 | 4.1e-07 | 29.0 | 1.5e-09 | 2.8e-06 | 26.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_396.1_65384.t1 | gi|291237670|ref|XP_002738749.1| | PREDICTED: ADP-ribosylation factor-like protein 2-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_396.1_65384.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_396.1_65384.t1 atgagtttcacacctttcagaactttaagaggactggacaatgcgggaaaaacaacaattttgaagaagttcaacggaga agatatcaacacaatatcacctacactgggcttcaatatcaaaacattagaacacagaggcttcaaattaaatgtatggg atgttggaggtcaaaggtcattgcgttcgtattggaggaattattttgagagtacagatggtttgatatgggttgtagac agcgcagacagaatgagattacaagattgtaaagaggaacttcaaaacctacttgtagaggagaggctagctggagctac attactagttttctcaaataaacaagatttacctggggccctgaagcctgaagaaataaaaaatgctttagatctggaca gtattaaaacacatcattggttaatacaagggtgcagtgctgtaacgggtgataatttactaaaaggcatagactggatc gtcgacgatatatcatcaaggatatttactatggactag |
|
Protein
| Protein ID | pfu_aug1.0_396.1_65384.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_396.1_65384.t1 MSFTPFRTLRGLDNAGKTTILKKFNGEDINTISPTLGFNIKTLEHRGFKLNVWDVGGQRSLRSYWRNYFESTDGLIWVVD SADRMRLQDCKEELQNLLVEERLAGATLLVFSNKQDLPGALKPEEIKNALDLDSIKTHHWLIQGCSAVTGDNLLKGIDWI VDDISSRIFTMD |
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