Gene
| Gene Model ID | pfu_aug1.0_396.1_65387 |
|---|---|
| Locus | scaffold396.1 : 41515 ... 52185 : - |
| To GenomeBrowser | scaffold396.1:41515..52185 |
| Genes list of scaffold | scaffold396.1 |
| Synonym | pfu_aug2.0_1740.1_01805 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_396.1_65387.t1 | 1 | 1 | BRE | 8 | 287 | 0.0 | 258.8 | 0.0 | 0.0 | 258.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_396.1_65387.t1 | gi|229621693|sp|B6NXD5.1|BRE_BRAFL | BRCA1-A complex subunit BRE [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_396.1_65387.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_396.1_65387.t1 atgtatgccatagataattacgatatttacgatgtgaacaggcaatgtgtgacagtgaccaaattcccgtgtggagacag atttaaactgaacataccttatgcagggattactctgacatgggaggtgttgtttgacaataatttcccggaggatccac ctgattttattttcagcaccgaggatgaggacttcagccctgatattcaggatatcaagagtttacgtgactgggatcac acggatccagcagcattaaccagtgtagtagaagagctgctgcagctctatagggactaccagctcagacagatagaagc ttactccaggctgaccctgcagctcaactccatgttagaggatcaaagtaccacaaaaatagataatcaggatgtggaga tattcctttatatagcagagacaaagttaggacctgttaatttcttgataaagttacctgtggattatacccaaattcca gcttatgttaccaaggataatccaggcacagacacatctgtattattgctaaccctcccacacccagacagtgccaggat tacaccacagttatacctctcacccagagtggagcatgctttaggtggatcaagttcacttaggatcccagctttcccca atggaggcctgatgggagattatgttgttggaatatcacaactacttcaaaacaaagttgatcaaattgtacagaatttt gacagaaggagagattatatggcagcattattatcatactttggaaggtcagttctggaatttgatgctgacacattcag aaaaatatcattgctgttcgaatggaatgatttcttctttatactgcacagtgagtttttttctctttacgaacttaaga cggttttcacggaacaaacgaagcacgattccaggcaaaacgctctagaacaatcaaaggnaaagccatacactgaagtt catgaagagtatccatacagccctaggtggtccggtagtgaaatggcagagagagcaagggtatacatcttggacaacat taaagacttccaaatacagtccgttagaagtggagttttatga |
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Protein
| Protein ID | pfu_aug1.0_396.1_65387.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_396.1_65387.t1 MYAIDNYDIYDVNRQCVTVTKFPCGDRFKLNIPYAGITLTWEVLFDNNFPEDPPDFIFSTEDEDFSPDIQDIKSLRDWDH TDPAALTSVVEELLQLYRDYQLRQIEAYSRLTLQLNSMLEDQSTTKIDNQDVEIFLYIAETKLGPVNFLIKLPVDYTQIP AYVTKDNPGTDTSVLLLTLPHPDSARITPQLYLSPRVEHALGGSSSLRIPAFPNGGLMGDYVVGISQLLQNKVDQIVQNF DRRRDYMAALLSYFGRSVLEFDADTFRKISLLFEWNDFFFILHSEFFSLYELKTVFTEQTKHDSRQNALEQSKXKPYTEV HEEYPYSPRWSGSEMAERARVYILDNIKDFQIQSVRSGVL |
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