Gene
| Gene Model ID | pfu_aug1.0_396.1_65388 |
|---|---|
| Locus | scaffold396.1 : 53846 ... 64963 : + |
| To GenomeBrowser | scaffold396.1:53846..64963 |
| Genes list of scaffold | scaffold396.1 |
| Synonym | pfu_aug2.0_1740.1_01804 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_396.1_65388.t1 | 2 | 1 | DEAD | 121 | 190 | 3.8e-26 | 91.5 | 2.3e-19 | 8.6e-16 | 57.8 |
| pfu_aug1.0_396.1_65388.t1 | 2 | 2 | DEAD | 190 | 247 | 3.8e-26 | 91.5 | 1.0e-11 | 3.8e-08 | 33.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_396.1_65388.t1 | gi|114663261|ref|XP_511048.2| | PREDICTED: probable ATP-dependent RNA helicase DDX28 [Pan troglodytes] | 6.0e-25 |
Transcript
| Transcript ID | pfu_aug1.0_396.1_65388.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_396.1_65388.t1 atgagtattcagttcctgcgttgcaaccctcttaatcttcaaagccttaggagctccgtcacatgtcttatcaagtgcca ctatcgtgtgaagcaccatgagttggatgaattaccaagaattactgctccatatcatctcaaaaagaaggcagcaaaag tgaagaagaaatcacagacgaaaaagacaccagaaagctcgagcaaaaagccgttactgataacctgcagtaaaccgttc tataatttccatattggtgatagatacaagaagcatgaacctgttttggcttccaaaggatggaagagttataaagccaa atcttcccatttcactattaatgctattggtatgaaattaaccatacctgagttacttcgtgggaaaaatgtgctgtgtg ctgctgatacaggcagcggcaagaccctggcatacctattaccagttctacagtctataacagaacagagagatatggac agatcgagtgatgatcacaaaacaacagcctcatctccaagagccattatactagtgccatccaaggaattagcactgca aattcagaatttaaaaaatacagaaatggacatccttattacttcgccagggatattaaaaaagttatctaattataagc tgataagttccagcaatctgcagcaccttgttttagatgaagccgattcgttactggatgacagtttcagctctgatatt agacacatcttagatacactcaaagtaagatag |
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Protein
| Protein ID | pfu_aug1.0_396.1_65388.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_396.1_65388.t1 MSIQFLRCNPLNLQSLRSSVTCLIKCHYRVKHHELDELPRITAPYHLKKKAAKVKKKSQTKKTPESSSKKPLLITCSKPF YNFHIGDRYKKHEPVLASKGWKSYKAKSSHFTINAIGMKLTIPELLRGKNVLCAADTGSGKTLAYLLPVLQSITEQRDMD RSSDDHKTTASSPRAIILVPSKELALQIQNLKNTEMDILITSPGILKKLSNYKLISSSNLQHLVLDEADSLLDDSFSSDI RHILDTLKVR |
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