Gene
| Gene Model ID | pfu_aug1.0_396.1_65391 |
|---|---|
| Locus | scaffold396.1 : 87756 ... 92548 : + |
| To GenomeBrowser | scaffold396.1:87756..92548 |
| Genes list of scaffold | scaffold396.1 |
| Synonym | pfu_aug2.0_1740.1_01803 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_396.1_65391.t1 | 5 | 1 | zf-C2H2 | 210 | 230 | 8.0e-12 | 44.7 | 0.037 | 55.0 | 4.4 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 1 | zf-C2H2_4 | 210 | 229 | 7.8e-08 | 32.1 | 0.068 | 100.0 | 3.6 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 2 | zf-C2H2 | 238 | 260 | 8.0e-12 | 44.7 | 7.2e-07 | 0.0011 | 19.2 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 2 | zf-C2H2_4 | 238 | 260 | 7.8e-08 | 32.1 | 0.00017 | 0.25 | 11.7 |
| pfu_aug1.0_396.1_65391.t1 | 6 | 1 | zf-H2C2_2 | 238 | 248 | 5.6e-06 | 26.3 | 0.0011 | 1.7 | 9.0 |
| pfu_aug1.0_396.1_65391.t1 | 6 | 2 | zf-H2C2_2 | 252 | 262 | 5.6e-06 | 26.3 | 0.92 | 1400.0 | -0.1 |
| pfu_aug1.0_396.1_65391.t1 | 6 | 3 | zf-H2C2_2 | 323 | 337 | 5.6e-06 | 26.3 | 0.0013 | 1.9 | 8.9 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 3 | zf-C2H2 | 327 | 349 | 8.0e-12 | 44.7 | 1.1e-07 | 0.00016 | 21.7 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 3 | zf-C2H2_4 | 327 | 349 | 7.8e-08 | 32.1 | 5.4e-06 | 0.0081 | 16.4 |
| pfu_aug1.0_396.1_65391.t1 | 6 | 4 | zf-H2C2_2 | 342 | 366 | 5.6e-06 | 26.3 | 1.4e-07 | 0.00021 | 21.4 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 4 | zf-C2H2 | 355 | 377 | 8.0e-12 | 44.7 | 0.002 | 2.9 | 8.4 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 4 | zf-C2H2_4 | 355 | 377 | 7.8e-08 | 32.1 | 0.00063 | 0.94 | 9.9 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 5 | zf-C2H2 | 423 | 446 | 8.0e-12 | 44.7 | 4.3e-05 | 0.063 | 13.6 |
| pfu_aug1.0_396.1_65391.t1 | 5 | 5 | zf-C2H2_4 | 423 | 446 | 7.8e-08 | 32.1 | 4.4e-05 | 0.066 | 13.5 |
| pfu_aug1.0_396.1_65391.t1 | 6 | 5 | zf-H2C2_2 | 423 | 432 | 5.6e-06 | 26.3 | 0.021 | 31.0 | 5.1 |
| pfu_aug1.0_396.1_65391.t1 | 6 | 6 | zf-H2C2_2 | 437 | 450 | 5.6e-06 | 26.3 | 0.091 | 140.0 | 3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_396.1_65391.t1 | gi|291242931|ref|XP_002741336.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_396.1_65391.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_396.1_65391.t1 atgcctaaaggatttctcgtcaaaagaactaataatccggcagcggtttcatatagaatacgaaggaattctgaagacag aggcgatgggagtttggaacaagatgccatagtaacaagatttggctctccggactcgggatactcggccagtccggtca attttgtcattaaggactcagaggataataaccaagaaaagaactttgtgactattgagagaccaccttcacctttgacc gtgagtactacgtcacaaccctcgcctttctattattcctcatttgataaacttagagtatcaacaaactcaccatctca tgaaaacctgagtcctaacattcatcagaaacaggaaagtgggcaatctcttaacagtccaaataaaagacgtggtgtgt cggaagtggaaaataaaatcaaatccccgaagaaaccaaaagctgccaggaaaatcaattttgatgaggacaagtcgtcc ccagtgtccggatgtatcataacagacatcgccccagacgaagagggcaaaattatagttggtgacattgacagctcctt taattgtgtagaggtcactccggaggctagagcagaactggaaaagatagaaaacaaaattggcgactacatttgccagc tctgcaaagaacagtaccaagatgcgtttaaattagcccagcatcgatgttcgaggattattcacgttgagtacaggtgt ccagaatgcgacaaggtttttaactgccctgcaaatttagcatcccaccgtcgatggcataaacctaggcctaatagtac cagcagtaaaacgaccgtgcctacccgcatactggctgcaaacaccgcagtacgaaacctgaacgaagctttgggagatg aaaaggataccaacggcaatgcaaatataaaggacaacggctacattttatcactaagtgcgagggacctgcgtaattca ccatcaaacgaaggacaatatcactgtgaaacatgcggtaagaaatttagacgtcaagcttacttacgaaaacatgttct gaatcattctaacgcatcgccattctcttgcaaattctgcaataagaactttgcgaatgaagctctgaaatcgaagcatg aaatgcagcatttcaataacaatgttaacaacaataatagcgttttaaataataataacaattgcaaaagtgccgcattt cacgacggacatattctcaaccagccatctttagagaattccagtttgagatctaccattgagacattcccttgcaagta ttgcagcagtacgttctgcagctctcctggacttacacggcatatcaacaagtgtcatccttcagaaaataggcaagtca tcctcctacaacttcctcccaatctgaaccgtcctatgtaa |
|
Protein
| Protein ID | pfu_aug1.0_396.1_65391.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_396.1_65391.t1 MPKGFLVKRTNNPAAVSYRIRRNSEDRGDGSLEQDAIVTRFGSPDSGYSASPVNFVIKDSEDNNQEKNFVTIERPPSPLT VSTTSQPSPFYYSSFDKLRVSTNSPSHENLSPNIHQKQESGQSLNSPNKRRGVSEVENKIKSPKKPKAARKINFDEDKSS PVSGCIITDIAPDEEGKIIVGDIDSSFNCVEVTPEARAELEKIENKIGDYICQLCKEQYQDAFKLAQHRCSRIIHVEYRC PECDKVFNCPANLASHRRWHKPRPNSTSSKTTVPTRILAANTAVRNLNEALGDEKDTNGNANIKDNGYILSLSARDLRNS PSNEGQYHCETCGKKFRRQAYLRKHVLNHSNASPFSCKFCNKNFANEALKSKHEMQHFNNNVNNNNSVLNNNNNCKSAAF HDGHILNQPSLENSSLRSTIETFPCKYCSSTFCSSPGLTRHINKCHPSENRQVILLQLPPNLNRPM |
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