Gene
| Gene Model ID | pfu_aug1.0_39739.1_70328 |
|---|---|
| Locus | scaffold39739.1 : 1 ... 12145 : - |
| To GenomeBrowser | scaffold39739.1:1..12145 |
| Genes list of scaffold | scaffold39739.1 |
| Synonym | pfu_aug2.0_172.1_07099 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_39739.1_70328.t1 | 1 | 1 | RRM_1 | 13 | 78 | 1.9e-17 | 62.6 | 6.8e-21 | 2.5e-17 | 62.2 |
| pfu_aug1.0_39739.1_70328.t1 | 1 | 1 | RRM_6 | 13 | 78 | 1.1e-12 | 47.7 | 4.3e-16 | 1.6e-12 | 47.2 |
| pfu_aug1.0_39739.1_70328.t1 | 1 | 1 | RRM_5 | 31 | 82 | 2.6e-14 | 52.8 | 9.8e-18 | 3.7e-14 | 52.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_39739.1_70328.t1 | gi|225712010|gb|ACO11851.1| | RNA-binding protein 1 [Lepeophtheirus salmonis] | 4.0e-30 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 6 |
| egg-4cell | 3 |
| 8-16cell | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_39739.1_70328.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39739.1_70328.t1 atgacaagtcacaaggaatggaaattagaatgtaaagtatacattggggacttgggatatggggctgcaaagcaagaaat tgaggatgcatttatccgatatggcaatgtactgaacgtatggatagcaagaaatcctcctggttttgcctttgtggagt ttgaagatccaagagatgcagaagatgcctgcaaagccttagatggaacgagaataaatggacggcgtgttcgagtagaa atgtcaagtggaaaatcacggtggggaaggagtggcccaccctctagacgtggagggggcagatatagagatgactatgg ccgtcatagaaggtcaagatacatacatgttcgagcacctgatcttttttatgcccccgttatcgaaggttcaggggcat atattttttgtcctgtccgtttgtctgtctgtctgttgtctgtccgcaaaaactttgaccttggtcataacttttga |
|
Protein
| Protein ID | pfu_aug1.0_39739.1_70328.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39739.1_70328.t1 MTSHKEWKLECKVYIGDLGYGAAKQEIEDAFIRYGNVLNVWIARNPPGFAFVEFEDPRDAEDACKALDGTRINGRRVRVE MSSGKSRWGRSGPPSRRGGGRYRDDYGRHRRSRYIHVRAPDLFYAPVIEGSGAYIFCPVRLSVCLLSVRKNFDLGHNF |
|