Gene
| Gene Model ID | pfu_aug1.0_3981.1_16235 |
|---|---|
| Locus | scaffold3981.1 : 28899 ... 43202 : - |
| To GenomeBrowser | scaffold3981.1:28899..43202 |
| Genes list of scaffold | scaffold3981.1 |
| Synonym | pfu_aug2.0_456.1_20798 |
Manual annotation
| Study field | signal molecules |
|---|---|
| Gene name | PDGF- and VEGF-receptor related |
| Description | BLAST best hit to vascular endothelial growth factor receptor [Idiosepius paradoxus] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3981.1_16235.t1 | 4 | 1 | I-set | 12 | 52 | 3.2e-19 | 68.5 | 3.7e-05 | 0.061 | 13.1 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 1 | Ig_3 | 14 | 44 | 2.7e-07 | 30.9 | 0.027 | 44.0 | 4.6 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 1 | Ig_2 | 31 | 53 | 2.3e-15 | 56.4 | 0.02 | 33.0 | 4.6 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 2 | Ig_3 | 88 | 154 | 2.7e-07 | 30.9 | 0.0015 | 2.5 | 8.7 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 2 | Ig_2 | 89 | 163 | 2.3e-15 | 56.4 | 5.8e-05 | 0.095 | 12.8 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 2 | I-set | 94 | 167 | 3.2e-19 | 68.5 | 6.6e-09 | 1.1e-05 | 25.2 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 3 | Ig_2 | 180 | 275 | 2.3e-15 | 56.4 | 3.1e-06 | 0.0051 | 16.9 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 3 | Ig_3 | 223 | 255 | 2.7e-07 | 30.9 | 0.012 | 20.0 | 5.8 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 3 | I-set | 231 | 257 | 3.2e-19 | 68.5 | 0.0033 | 5.4 | 6.9 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 4 | I-set | 292 | 328 | 3.2e-19 | 68.5 | 1.2e-06 | 0.002 | 17.9 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 4 | Ig_2 | 293 | 331 | 2.3e-15 | 56.4 | 3.5e-06 | 0.0058 | 16.7 |
| pfu_aug1.0_3981.1_16235.t1 | 4 | 4 | Ig_3 | 302 | 328 | 2.7e-07 | 30.9 | 0.0012 | 2.0 | 8.9 |
| pfu_aug1.0_3981.1_16235.t1 | 1 | 1 | Pkinase_Tyr | 364 | 615 | 0.0 | 260.0 | 0.0 | 0.0 | 259.3 |
| pfu_aug1.0_3981.1_16235.t1 | 2 | 1 | Pkinase | 368 | 409 | 3.5e-32 | 111.5 | 9.1e-05 | 0.15 | 11.1 |
| pfu_aug1.0_3981.1_16235.t1 | 2 | 2 | Pkinase | 456 | 614 | 3.5e-32 | 111.5 | 2.8e-31 | 4.6e-28 | 98.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3981.1_16235.t1 | gi|284999802|dbj|BAI67804.1| | vascular endothelial growth factor receptor [Idiosepius paradoxus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_3981.1_16235.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3981.1_16235.t1 aattcagaccgggtgcgttacacacgacctataagagaccctgtacagacacagtttgcctatgaccatatctacagtaa attgactgtgatgaatgcaggaaagaaagacgagggcgtgtaccgatgtataactacaacacatgacgggaaatcaaagc ctatcgaaaaacttgtctatatacaagatgaaccagttctaattattggtgaatacagcatctccagtccatcctacagt acaaatgggctcttttacactgtggaagggcaaggaaatgtcacaataataaacaccgtagaagcgttcccgagctttaa tgttacatggtatttgaatggtgctcccatcagaatagggggaaaagaatataatgaaacaaagattgagagtgaatatg gtatcagaatagctaaagctgcccatcaccacagaggaaattatactgcagttctgtcaaatggttttgagtggaagagc aaaagcttctatttggttgtaaaatacagtcctagtggtatggatatggacatgtcatcagattcccttattgaagaaaa tccactcaatgtatcctgtcgtgtcacaaaatgggaatattctgacgtgagtgtctactttgtacggagaggaaaggtga aggcagtccgtctgacagagaacaactggacgtacatagatactttatctaccaataaatcacacgtcacaaagctttat atacccagtgtcaatatgactaatgacggctcatatagatgtgtaccaacgcttttaaacggcactgtagaccacgaggg gtataaaagtaaagacttcagggtcatagccattgaaaagccaaagtttgtctccaagaatcacgaggtggttgaggagg tgcgagccataaaaggtgacatgttcattctacgtgagtgtgaggttacaggaataccaaagccctctgtacgctggtat aaagatggcatgattatcgatactgaaaacaatactcttggcatcacattgtctgatgacgatatgagagttataaaggc tgaggctataggaatagtaggacatgaggacatcacagtggtagctgtcaaaatggtcaaaggacagcatcttaacattg tcaacctacttggagctgttactaaagatatcagatatggagaattatacgttattgtggagtactgtcactttgggaat ctacgttccttcatactgaaacacaaggaggaatttaaagatgtaatgaacgattacgtagacccggctacggagaaaca gagagaagcagcacgagaggctgcagccagtaaaccttactatgttaataaagccctgatagaaaatacggcagatctga ttggaccacctctaacaaccaaaaatctcatctgctgggcattccaagtggccagggggatggagtacctggcctctaaa aagtatattcacagagatttggcagctaggaatgtattattagcagaggataatgtagtgaagatatgtgactttggtct ggctaaggactgctataaaaacccagaatatcacaaaaaaggagacggtcccgtaccagtgaaatggatggccattgaat ccctcactcataggctgtatacctcaaaaagtgatgtatggtcatatggtatatttctatgggagttattttctttagga ggaagcccttatcctggtgtagagatcaatgagaagtttataggtttactgaaggacgggtacagaatggagaaaccaag gcattcttctgatgaaatgtataaggtgatgcaggcgacatggagagaggacgcggatgatcgaccaaccttcacacagc tggcgtgcttaatgggagatttcctggaagaaaacgtcaaacagtaa |
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Protein
| Protein ID | pfu_aug1.0_3981.1_16235.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3981.1_16235.t1 NSDRVRYTRPIRDPVQTQFAYDHIYSKLTVMNAGKKDEGVYRCITTTHDGKSKPIEKLVYIQDEPVLIIGEYSISSPSYS TNGLFYTVEGQGNVTIINTVEAFPSFNVTWYLNGAPIRIGGKEYNETKIESEYGIRIAKAAHHHRGNYTAVLSNGFEWKS KSFYLVVKYSPSGMDMDMSSDSLIEENPLNVSCRVTKWEYSDVSVYFVRRGKVKAVRLTENNWTYIDTLSTNKSHVTKLY IPSVNMTNDGSYRCVPTLLNGTVDHEGYKSKDFRVIAIEKPKFVSKNHEVVEEVRAIKGDMFILRECEVTGIPKPSVRWY KDGMIIDTENNTLGITLSDDDMRVIKAEAIGIVGHEDITVVAVKMVKGQHLNIVNLLGAVTKDIRYGELYVIVEYCHFGN LRSFILKHKEEFKDVMNDYVDPATEKQREAAREAAASKPYYVNKALIENTADLIGPPLTTKNLICWAFQVARGMEYLASK KYIHRDLAARNVLLAEDNVVKICDFGLAKDCYKNPEYHKKGDGPVPVKWMAIESLTHRLYTSKSDVWSYGIFLWELFSLG GSPYPGVEINEKFIGLLKDGYRMEKPRHSSDEMYKVMQATWREDADDRPTFTQLACLMGDFLEENVKQ |
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