Gene
| Gene Model ID | pfu_aug1.0_3988.1_59397 |
|---|---|
| Locus | scaffold3988.1 : 50626 ... 54159 : + |
| To GenomeBrowser | scaffold3988.1:50626..54159 |
| Genes list of scaffold | scaffold3988.1 |
| Synonym | pfu_aug2.0_1449.1_31689 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3988.1_59397.t1 | 1 | 1 | DUF4464 | 1 | 125 | 0.0 | 197.0 | 0.0 | 0.0 | 196.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3988.1_59397.t1 | gi|261289471|ref|XP_002604711.1| | hypothetical protein BRAFLDRAFT_122572 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3988.1_59397.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3988.1_59397.t1 atgacaacggttatttttatcagagattttaatccgagaggacaggaaatttctggttacatagactatgcacacaggtt aaagacagaggactttgagccttatttctctggaaagaagaagttactccctcgttcatcagatttaagcttctataact gggagacccagacttcaacatcaaaccctactccaaattaccaagtcatagcagaaaatgcatcaggactgctcttcaaa aataaaagggacagaaaacaactgaatgtagaccctaaggctttaagtccaggagacaattctgaaaggactgtaataga atctccaaattatgtgcaagttgttatatatgaccatattaccagaaggaaaacgtag |
|
Protein
| Protein ID | pfu_aug1.0_3988.1_59397.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3988.1_59397.t1 MTTVIFIRDFNPRGQEISGYIDYAHRLKTEDFEPYFSGKKKLLPRSSDLSFYNWETQTSTSNPTPNYQVIAENASGLLFK NKRDRKQLNVDPKALSPGDNSERTVIESPNYVQVVIYDHITRRKT |
|