Gene
| Gene Model ID | pfu_aug1.0_39955.1_12394 |
|---|---|
| Locus | scaffold39955.1 : 1 ... 5483 : + |
| To GenomeBrowser | scaffold39955.1:1..5483 |
| Genes list of scaffold | scaffold39955.1 |
| Synonym | pfu_aug2.0_3458.1_29108 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_39955.1_12394.t1 | 2 | 1 | Laminin_G_3 | 13 | 157 | 4.2e-06 | 27.0 | 2.6e-07 | 0.00098 | 19.3 |
| pfu_aug1.0_39955.1_12394.t1 | 2 | 1 | Laminin_G_2 | 35 | 160 | 1.2e-31 | 109.3 | 9.8e-22 | 3.6e-18 | 65.8 |
| pfu_aug1.0_39955.1_12394.t1 | 2 | 1 | Laminin_G_1 | 36 | 160 | 1.6e-31 | 109.0 | 1.4e-21 | 5.1e-18 | 65.3 |
| pfu_aug1.0_39955.1_12394.t1 | 2 | 2 | Laminin_G_3 | 208 | 294 | 4.2e-06 | 27.0 | 0.0045 | 17.0 | 5.6 |
| pfu_aug1.0_39955.1_12394.t1 | 2 | 2 | Laminin_G_2 | 215 | 301 | 1.2e-31 | 109.3 | 2.8e-14 | 1.0e-10 | 41.7 |
| pfu_aug1.0_39955.1_12394.t1 | 2 | 2 | Laminin_G_1 | 216 | 293 | 1.6e-31 | 109.0 | 2.6e-14 | 9.7e-11 | 41.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_39955.1_12394.t1 | gi|291228004|ref|XP_002733971.1| | 1.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_39955.1_12394.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39955.1_12394.t1 tttcttcagattttgagaacagctagtttttctgcaaacagaaatggttacatcaagttacctcttgattctattggtga aaactttgatatgacgttcagactgaaaaccaaatcggacagcagccttattgcttatacatctagcaacaatcagaact ctggattctctgtgtcaacaaatgatggtaaaatcataatcatcagtgattctggtaatgatcctgtagtgttagagtct actgtcaatacgtacaacgacggagcatggcattacatctctatcatgaaaatgggtgttaagttgatgattaacataga tgacagagaattaataactaaaccaggtagcagctctgcttatttattaaccgagcgggaactttaccttggcggtactg atttcacagtagaggaggatcttgtaggatcatcggaccgatttgtaggctgtgtctccgatgtcactgttaatggaaag tttaagaactttgccagtatagtaagcaggaatgtgaaggatgtatcattctctgaatgtccagtagaagatcctgatac acccacgcctactgaagctccaatcatcgacactacagacaagaattatggtgtaggcttagatctgtcaatcagaatga gtatccgtccacgtaacaacaccggggtgttattctctatccatgctgatgacatggactacctactcctacagatggtg aatggcaggatattactaagtgctgacaatggtggaggtgcctttgacacgacctatgaccctggatttgacactgcact gtgtgatggacaatggcatgagatagaggctattaaagctaaggagatcctgatattacgtgtagatggtgttaactcta cccctggacagggaacaggggatcctccgagattaactctaaccatccactctatattggtggagtgccagatttccagc gtagaggaatga |
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Protein
| Protein ID | pfu_aug1.0_39955.1_12394.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39955.1_12394.t1 FLQILRTASFSANRNGYIKLPLDSIGENFDMTFRLKTKSDSSLIAYTSSNNQNSGFSVSTNDGKIIIISDSGNDPVVLES TVNTYNDGAWHYISIMKMGVKLMINIDDRELITKPGSSSAYLLTERELYLGGTDFTVEEDLVGSSDRFVGCVSDVTVNGK FKNFASIVSRNVKDVSFSECPVEDPDTPTPTEAPIIDTTDKNYGVGLDLSIRMSIRPRNNTGVLFSIHADDMDYLLLQMV NGRILLSADNGGGAFDTTYDPGFDTALCDGQWHEIEAIKAKEILILRVDGVNSTPGQGTGDPPRLTLTIHSILVECQISS VEE |
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