Gene
| Gene Model ID | pfu_aug1.0_3998.1_01598 |
|---|---|
| Locus | scaffold3998.1 : 3816 ... 11096 : + |
| To GenomeBrowser | scaffold3998.1:3816..11096 |
| Genes list of scaffold | scaffold3998.1 |
| Synonym | pfu_aug2.0_2940.1_02298 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3998.1_01598.t1 | 1 | 1 | RVT_1 | 666 | 734 | 4.5e-07 | 29.4 | 1.5e-10 | 1.1e-06 | 28.1 |
Transcript
| Transcript ID | pfu_aug1.0_3998.1_01598.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3998.1_01598.t1 atgattgatattgcagaaaatcccgatttgcacgttccaacggtcgcttctgatacaagcatgaatacaactacttcacg ttctagtagtgatcatgatagatcagattctgtagatccgaataaatctatagatccgactgaagatctgattaataaaa tcagtgggttaattattgacaaaaatgaagatcatagtgcatcatctgccggtataaaagttgagacaaagagtgaccca cttgaaactcaaaacactgtaccagttgtgagatccaaagtccgaacaaatcaggtaaatggacaaaagtttgatggtac aaagcagtgtcgtacaggacctttgactcataatactaagagtgtaggtcaaccagtacatacaaaacacagttcaacca gtcaaccattaggtcaacctaatatgcaaattggaggtcaacaaataggtcaaccgttaatgcaaaatcaaggactagca tttggtcaacaattaacaccgaatcaaggtcaacagctaggacaacttcacatacagactcaaggtcaacaactaggtca accctatatgcaggtaccaggtcaaacccatcaaaaccctgtaccaaaccaacgattcctgtggcaaatgttccagtatc caaatcagccaactatgcagaatggtatgccaggtatgtttattccatggacaccatactttggtgcaccatgtaatatg ccgtatggaatgcttttgccaggacaattttggcaacctaatcctaatttagggtatcaaggttttccaaatccaggtaa tatgaatcagggaattttgaccccagtcaattttggtaaccgaaatttaggtcaacaaccaggtaacctgaatttaggtc aacaaccagctaccatgaatttaggaccacaaccaggtaacttgaatataggtcagcaacaaggtaatatgaaccttgga caacaaggtaatatgaatgtaggtaaccttggtaacaacacaaaccaagtacaaggtaatcaacatggtttacctaataa tgccggaaatcaagatccaggtgtgaaccgtcaaagaagaaataaacgaaatgcacaacaaggtaatcaaggtcaacaag gattgcctttaccaggacaagggaaccaaggtcaaccagctatgcaacctaatcaacaacctggaatgcagtttaataac aaccaaggccaaagaattcaagaattgccaggtcagattaatcaaggacaaggtttccaaaaccaagggcaaggaaatgc aggtcaaagacatggtaacatagggcaaggaaaacaaggaaatggtaacccaggacaaggaaaccaaagaaatggtaacc aggttgcaaacaggaggatattacaacgccaacaaaatgagcccatttccaaaggactgaagtatgatgggaaagaacac tggttaggcttcaaacacaagtttcttcgttacaaaaactcacgcaactggacagacgaagaagcaagggaccaattatg ttactgcttggaatcaaaagcaaaggacgacatgctaattggtttagactttatgtcaagccataaagctacaatcaata aggaccaaggatatcttaacatctgtaaccacgaaataccatttggcagcgaggctccacttatgtcattcgtcaacacc tcagacaataaggtaacacttttcaagaatcagaaagtaggtcacctttatgaaattgatgaaatcgtaccagattcaaa cacttcatccaacgatattgtttacgtctctaaagtgactaaacaagatgaattgccagagtatctcaaagacttatacc agcgctcgtttacaggtttaagcgagtcagaaaaaagtgaactaaaatccttattaatcaattattctgacgtattttca tcacacgagtatgatattggcagtttcacagcaatagagcattccatcgacactggtggcgctaaaccaatcaaacaacg ggtcatgaacttagtactcagaggtgtacactggaaaatcgtgttggcttttttggatgacgtgttagttttgggacgaa actttaacgatcatatcaaaaatcttgcagaagtcttcactcgcctaagacaatacgggataaaacttaaagccaagaag tgtgacctatttcgccaggaagttgagtatctaggtagaacagtaggccgagagggaatgaaggcaggtatcttcatcct ggatactgacgcatcagacttcgctataggagctgagttatcacaaatacaggatggcgaagagcgttgtatctgttatg ctagtttttcactgaccccagaacagagaaggtattgtaccacaaggaaagaactcttagcagtcgtacggtttacaaga cagtttaggcattatttacttggccgcaaattcattgtaaggactgatcacagtagtctccagtggctgataaatttcaa ggatccacaaggccaacttgccagatggttggaggaattgagacaatactggatgatcatacgcaatcgaccaggtataa ggcaccaaaatgcagatgctctatctaggatgcctgaaacatcggcttgctcagagtatcgccaccatgtagaacctaaa gaacttccttgtggtggttgtcagtattgtgtaaagagacacaaagattggagcatttttatcgaaacattggacgacgc cgtcccactggttccaagtcggaatatggtacgacaagttacaacaccgttatcttggattaagggatattcatggaatg aagtcaaagatctacaaggaaaggagaaggaccttttgtcaattatccaatggctgacgagtcagcaggcaccttccgag agtgacctgttccttaatagcccagctagcaaacattattggatgaataaggaactatttttcatttgtgatgagggtgt tctttggaaaactgaagctgacaataatgcttccaaactactagtcgtgccaggtttcatgagaaaggaaatcttgagta tgagccacgatttaccatcttctggtcaccaaggacaagaaagaacattccatagatgtaaatcacgtttctattggtac gcaatgcaacaggatgtaaaacactttgtcatctcatgttcggaactgtacatttcccttttgaaagctacaccagagga gaggaaggaagcacttcttttgcagtatgaagtggccaaagagaaaaaaagccatttctggatccaggagatgaggaaaa atgcagcctgtgattttcctgttgactgggttgatgagaacatgccagcattaaatggccaacggatgcggcaacaccaa actaagagttcatccaggtctgtatcatcgttagattatttggagcaaccgcatgatttccggttagactccatcccaaa cttaccagtacatcggtctgatgctgcggatttgctacaggaagatcccaaaccaaagaaatcttccatgaagtcttcct cctcttcacaatcgaaggaaaagaagaaggttactttggttgagccagaacaaaggtcgaaagaagtggagagtcgcaga caacatcggcgcaccaaagaacagaagagcagtacctctaaacaaagaagttctcgtgaagagagtcgctacacacatac tcaagagcgaaaacgagacaccagtacctccaaacacaaaagggatactgaacaaagaagtcgcagtcctcgtcggcgat cttctgaaaggagacgtttcgttagcgagtctgaagatactttgacagtttcaatttcatccagtaaagtacaaaaggat cttacatgtcctctggagtgtggctcccatgacaaaaagtaa |
|
Protein
| Protein ID | pfu_aug1.0_3998.1_01598.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3998.1_01598.t1 MIDIAENPDLHVPTVASDTSMNTTTSRSSSDHDRSDSVDPNKSIDPTEDLINKISGLIIDKNEDHSASSAGIKVETKSDP LETQNTVPVVRSKVRTNQVNGQKFDGTKQCRTGPLTHNTKSVGQPVHTKHSSTSQPLGQPNMQIGGQQIGQPLMQNQGLA FGQQLTPNQGQQLGQLHIQTQGQQLGQPYMQVPGQTHQNPVPNQRFLWQMFQYPNQPTMQNGMPGMFIPWTPYFGAPCNM PYGMLLPGQFWQPNPNLGYQGFPNPGNMNQGILTPVNFGNRNLGQQPGNLNLGQQPATMNLGPQPGNLNIGQQQGNMNLG QQGNMNVGNLGNNTNQVQGNQHGLPNNAGNQDPGVNRQRRNKRNAQQGNQGQQGLPLPGQGNQGQPAMQPNQQPGMQFNN NQGQRIQELPGQINQGQGFQNQGQGNAGQRHGNIGQGKQGNGNPGQGNQRNGNQVANRRILQRQQNEPISKGLKYDGKEH WLGFKHKFLRYKNSRNWTDEEARDQLCYCLESKAKDDMLIGLDFMSSHKATINKDQGYLNICNHEIPFGSEAPLMSFVNT SDNKVTLFKNQKVGHLYEIDEIVPDSNTSSNDIVYVSKVTKQDELPEYLKDLYQRSFTGLSESEKSELKSLLINYSDVFS SHEYDIGSFTAIEHSIDTGGAKPIKQRVMNLVLRGVHWKIVLAFLDDVLVLGRNFNDHIKNLAEVFTRLRQYGIKLKAKK CDLFRQEVEYLGRTVGREGMKAGIFILDTDASDFAIGAELSQIQDGEERCICYASFSLTPEQRRYCTTRKELLAVVRFTR QFRHYLLGRKFIVRTDHSSLQWLINFKDPQGQLARWLEELRQYWMIIRNRPGIRHQNADALSRMPETSACSEYRHHVEPK ELPCGGCQYCVKRHKDWSIFIETLDDAVPLVPSRNMVRQVTTPLSWIKGYSWNEVKDLQGKEKDLLSIIQWLTSQQAPSE SDLFLNSPASKHYWMNKELFFICDEGVLWKTEADNNASKLLVVPGFMRKEILSMSHDLPSSGHQGQERTFHRCKSRFYWY AMQQDVKHFVISCSELYISLLKATPEERKEALLLQYEVAKEKKSHFWIQEMRKNAACDFPVDWVDENMPALNGQRMRQHQ TKSSSRSVSSLDYLEQPHDFRLDSIPNLPVHRSDAADLLQEDPKPKKSSMKSSSSSQSKEKKKVTLVEPEQRSKEVESRR QHRRTKEQKSSTSKQRSSREESRYTHTQERKRDTSTSKHKRDTEQRSRSPRRRSSERRRFVSESEDTLTVSISSSKVQKD LTCPLECGSHDKK |
|