Gene
| Gene Model ID | pfu_aug1.0_39991.1_05104 |
|---|---|
| Locus | scaffold39991.1 : 1 ... 5480 : - |
| To GenomeBrowser | scaffold39991.1:1..5480 |
| Genes list of scaffold | scaffold39991.1 |
| Synonym | pfu_aug2.0_1168.1_28105 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-ARNT |
| Description | Best hit to AAH60838 ARNT protein [Homo sapiens] with 4e-165 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein has a PAS domain and an insignificant PAS_3 domains. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_39991.1_05104.t1 | 1 | 1 | HLH | 24 | 75 | 3.5e-14 | 52.2 | 2.3e-17 | 5.0e-14 | 51.7 |
| pfu_aug1.0_39991.1_05104.t1 | 2 | 1 | PAS | 101 | 202 | 6.9e-21 | 74.1 | 4.2e-17 | 8.9e-14 | 51.2 |
| pfu_aug1.0_39991.1_05104.t1 | 2 | 1 | PAS_11 | 118 | 168 | 1.1e-17 | 63.9 | 5.9e-08 | 0.00013 | 21.9 |
| pfu_aug1.0_39991.1_05104.t1 | 2 | 1 | PAS_3 | 121 | 174 | 2.6e-13 | 49.8 | 3.9e-08 | 8.2e-05 | 22.6 |
| pfu_aug1.0_39991.1_05104.t1 | 2 | 2 | PAS_11 | 292 | 342 | 1.1e-17 | 63.9 | 1.7e-13 | 3.7e-10 | 39.7 |
| pfu_aug1.0_39991.1_05104.t1 | 2 | 2 | PAS | 300 | 343 | 6.9e-21 | 74.1 | 1.2e-07 | 0.00024 | 20.8 |
| pfu_aug1.0_39991.1_05104.t1 | 2 | 2 | PAS_3 | 305 | 344 | 2.6e-13 | 49.8 | 9.2e-09 | 1.9e-05 | 24.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_39991.1_05104.t1 | gi|95007805|dbj|BAE94239.1| | aryl hydrocarbone receptor nuclear translocator [Daphnia magna] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_39991.1_05104.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39991.1_05104.t1 ttctgaagatgaggacagtcaacagggaggaagctacagccaggaacaggctgataaggaaagatttgccagggagagtc attgtgagattgagagacgtaggaggaataagatgacgacctacattaatgagctgtgtgatatggtacccacatgcagt acgttggcacggaaaccagataaactgaccatactcagaatggccgtatcccacatgaagactttacgaggtacaggagc tggaaatactagtgtagatgggtgttacaagccgtcatttcttaccgaccaagaactcaaacatcttatattagaggccg ccgatggatttctatttgtggtacagtgtgacacagggagaattatttatgtgtctgattccataacacctgtactacat caaagtcagagtgattggtttgggaacaccttatatgaacttgtacacccagacgatgtggagaaagtcagggaacaact atctactacagaatcacagaatactggcagaatccttgatctcaaaaccggcacagtgaagaaagatagtcatcaaacgt ctattcgtctttgtatgggttctagacgagggtttatatgccgtatgaagatgggtaacgttcaggtagatcccatgaca gccaatcacagcctgagaatcaggaaccgtaacacactgggaccatcaagtgacggaaaccattacagtgtagtacatgt gacaggatacatcaaaaactggcctccttcaggtgttcagatggagagagaagcagatgagaatgctgggagtcactgtt gccttgtgggtataggtcgtctacaggtcactagcactcctaactgtaacgatatgatgggtcctaacggagcatcagag tttatatccaggcacagcattgatggaaaatttacctttgttgatcaaagagtatcaccagtactaggatatcaacccca ggagctcctaggcaaatcagccttcgacttctatcacccggaagataaaaatatattaaaagaaacttttgaccaag |
|
Protein
| Protein ID | pfu_aug1.0_39991.1_05104.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_39991.1_05104.t1 SEDEDSQQGGSYSQEQADKERFARESHCEIERRRRNKMTTYINELCDMVPTCSTLARKPDKLTILRMAVSHMKTLRGTGA GNTSVDGCYKPSFLTDQELKHLILEAADGFLFVVQCDTGRIIYVSDSITPVLHQSQSDWFGNTLYELVHPDDVEKVREQL STTESQNTGRILDLKTGTVKKDSHQTSIRLCMGSRRGFICRMKMGNVQVDPMTANHSLRIRNRNTLGPSSDGNHYSVVHV TGYIKNWPPSGVQMEREADENAGSHCCLVGIGRLQVTSTPNCNDMMGPNGASEFISRHSIDGKFTFVDQRVSPVLGYQPQ ELLGKSAFDFYHPEDKNILKETFDQ |
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